View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_low_5 (Length: 426)
Name: NF5722_low_5
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 8205171 - 8205565
Alignment:
| Q |
13 |
aatatcaaattgagaaatcatagcttgacactcatctatacttctacactcacccaatcttccaagcattctctttagactctttggtgtgatgcaacca |
112 |
Q |
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| T |
8205171 |
aatatcaaattgagaaatcatagcttgacattcatctacacttctacactcacccaatcttccaagcattctctttagactctttggtgtgatgcaacca |
8205270 |
T |
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| Q |
113 |
catccctccatttcatacatcttaaaagcctctcttaggtcatttactttctcttcctctttccctccctctacaaacttcacaaaatcatccaacccaa |
212 |
Q |
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| T |
8205271 |
catccttccatttcatacatcttaaaagcctctcttaggtcatttactttctcttcctctttccctccctctacaaacttcacaaaatcatccaacccaa |
8205370 |
T |
|
| Q |
213 |
tcaacccatcaccgtccgagtcgagaagctcaaccgccatttccgcctcctcgttcgacatctttgccccgattgcctcaacacattgccgcagctccga |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8205371 |
tcaacccatccccgtccgagtcgagaagctcaaccgccatttccgcctcctcgtttgacatctttgccccgattgcctcaacacattgccgcagctccga |
8205470 |
T |
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| Q |
313 |
tgatgatagttttccatctccattttcatcaaagtggttgaacacacgtatgtattgagtcaccttgtccatgaccatatctatataatttgtgt |
407 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8205471 |
tgatgatatttttccatctccattttcatcaaagtggttgaacacacgtatgtattgagtcaccttgtccatgaccatatctatataatttgtgt |
8205565 |
T |
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