View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_low_6 (Length: 388)
Name: NF5722_low_6
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 52671685 - 52671461
Alignment:
| Q |
1 |
aggctacctatactttgcaaagtttttatttaatttaaggtaacagtgcatatgctttgttgaagcttttcttgctctggagttgctattattgtatttt |
100 |
Q |
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| T |
52671685 |
aggctacctatactttgcaaagtttttatttaatttaaggtaacagtgcatatgctttgttgaagcttttcttgctctggagttactattattgtatttt |
52671586 |
T |
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| Q |
101 |
ctttcctcgctaatgaataacaactttatttatttgggttgtaaagacaagttttctattcttatataatgtagacaagttcttaattttgaccttacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52671585 |
ctttcctcgctaatgaataacaactttatttatttgggttgtaaagacaagttttctattcttatataatgtagacaagttcttaattttgaccttacat |
52671486 |
T |
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| Q |
201 |
aaactatcaatttgtttcatgtagt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
52671485 |
aaactatcaatttgtttcatgtagt |
52671461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 238 - 378
Target Start/End: Complemental strand, 52671384 - 52671244
Alignment:
| Q |
238 |
actacaaagagatggaaatggcttgagtacattcggtacgtcaacatataagagtatgaagaaatgtactcttaactacaaaccatagacatgcggtggg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52671384 |
actacaaagagatggaaatggcttgagtacattcggtacgtcaacatataagagtatgcagaaatgtactcttaactacaaaccatagacatgcggtggg |
52671285 |
T |
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| Q |
338 |
caaaaatgtatatattttatatctaatcgtttatgatgatg |
378 |
Q |
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| T |
52671284 |
caaaaatgtatatattttatatctaatcgtttatgaagatg |
52671244 |
T |
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