View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5722_low_7 (Length: 367)
Name: NF5722_low_7
Description: NF5722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5722_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 121 - 349
Target Start/End: Complemental strand, 19890232 - 19889995
Alignment:
| Q |
121 |
gaggagttattatcatatagtattagggaccaacctaaactgttcaatagattgtactcttttcttcactttctacttgagtcattcaaatacagtaaca |
220 |
Q |
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| T |
19890232 |
gaggagttattatcatatagtattagggaccaacctaaactgttcaatagattgtactcttttcttcactttctacttgagtcattcaaacacagtaaca |
19890133 |
T |
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| Q |
221 |
gaaacaggaagcaataacaac---------aacatgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaag |
311 |
Q |
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| T |
19890132 |
gaaacaggaagcaataacaacaacaacaacaacatgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaag |
19890033 |
T |
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| Q |
312 |
ccttcagcgacgtcactttccaagttgaaggtcgtttg |
349 |
Q |
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| T |
19890032 |
ccttcagcgacgtcactttccaagttgaaggtcgtttg |
19889995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 19890344 - 19890292
Alignment:
| Q |
9 |
acatcatcaacatcaatgaaaacaacacaagtatcaaacaattaaaacccaac |
61 |
Q |
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| T |
19890344 |
acatcatcaacatcaatgaaaacaacacaagtatcaaacaattaaaacccaac |
19890292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 35317210 - 35317290
Alignment:
| Q |
244 |
catgtcccttgaagagactctaagatctctctcccttgactacctgaatctcctcatcaacggccaagccttcagcgacgt |
324 |
Q |
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| T |
35317210 |
catgtcccttgaagactcactaagatctctttctttagactacttaaaccttctcatcaacggacaagcgttcagcgacgt |
35317290 |
T |
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