View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723-Insertion-10 (Length: 224)
Name: NF5723-Insertion-10
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 24655900 - 24656116
Alignment:
| Q |
8 |
attggattatgttactgaggtagaatcaatgtactaatgcagagaatacaatggactgttaatgtcatctgtctcatgaaagtatcattttctttttata |
107 |
Q |
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| T |
24655900 |
attggattatgttactgaggtagaatcaatgtactgatgcagagaatacaatggactgttaatgtcatctgtctcatgaaagtatcattttctttttata |
24655999 |
T |
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| Q |
108 |
agtgaaggtttgattacagttctgtttttacctgtttactgttctatcagaatatcattaacgagtaaaccctcaatttagatcactcttctatctagtc |
207 |
Q |
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| T |
24656000 |
agtgaaggtttgattacagttctgtttttacttgtttactgttctatcagaatatcattaacgagtaaaccctcaatttagatcactcttctatctagtc |
24656099 |
T |
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| Q |
208 |
tttaaaaaatgaacaca |
224 |
Q |
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|||||| |||||||||| |
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| T |
24656100 |
tttaaacaatgaacaca |
24656116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 29416453 - 29416360
Alignment:
| Q |
63 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacctgtttactgttctatca |
156 |
Q |
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| T |
29416453 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatca |
29416360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 29415287 - 29415218
Alignment:
| Q |
156 |
agaatatcattaacgagtaaaccctcaatttagatcactcttctatctagtc-tttaaaaaatgaacaca |
224 |
Q |
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| T |
29415287 |
agaatatcattaacgagtaaaccctcaatttagacccctcttttgtctagtcttttaaataatgaacaca |
29415218 |
T |
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