View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723-Insertion-11 (Length: 235)
Name: NF5723-Insertion-11
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-11 |
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| [»] chr2 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 27077499 - 27077271
Alignment:
| Q |
8 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcacaaggcacaaattgtttctaatgattat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
27077499 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcgcaaggtacaaattgtttctaatgattat |
27077400 |
T |
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| Q |
108 |
cttacagggtactaataacatagatttggatagttgttgttgctacatgtcgctattattttcgaatgactgttagatcaagttgaaatatttgtta-aa |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27077399 |
cttacggggtactaataacatagatttggatagttgttgttgctacatgtcgctattattttcgaatgactgttagatcaagttgaaatatttgttaaaa |
27077300 |
T |
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| Q |
207 |
aagctaattcctgcttcagcggtcatgcc |
235 |
Q |
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| T |
27077299 |
aagctaattcctgcttcagtggtcatgcc |
27077271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 27027263 - 27027472
Alignment:
| Q |
8 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcacaaggcacaaattgtttctaatgattat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| |||| || |||||||||||||| |
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| T |
27027263 |
atttggaggcatttgtatacattgtgggcaaaaggtggatgcggaatctggtgtgtcatttgggtatatacataaggtacaatttttttctaatgattat |
27027362 |
T |
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| Q |
108 |
cttacagggtactaataacatagatttggatagttgttgttgctacatgtcgctattattttcgaatgactgttagatcaagttgaaatatttgttaaaa |
207 |
Q |
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| T |
27027363 |
cttgcggggtactaataacatagatttggatagttgttgttgccacatgtcgc---tatttttgaatgactgttagattaagt-----tatttgtttaaa |
27027454 |
T |
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| Q |
208 |
agctaattcctgcttcag |
225 |
Q |
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| T |
27027455 |
agctaattcctgattcag |
27027472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 26987787 - 26987943
Alignment:
| Q |
8 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcacaaggcacaaattgtttctaatgattat |
107 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||| || |||||||||||||| |
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| T |
26987787 |
atttggaggcatttgtatacattgtggacaaaaggtggatggggaatctggtgtgtcatttgggtatatacataaggtacaatttttttctaatgattat |
26987886 |
T |
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| Q |
108 |
cttacagggtactaataacatagatttggatagttgttgttgctacatgtcgctatt |
164 |
Q |
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| T |
26987887 |
cttgcggggtactaataacatagatttggatagttgttgttgccacatgtcgctatt |
26987943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 26987950 - 26988002
Alignment:
| Q |
183 |
gatcaagttgaaatatttgttaaaaagctaattcctgcttcagcggtcatgcc |
235 |
Q |
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|||||| |||||||||||||| ||||||| ||||||| ||||| | ||||||| |
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| T |
26987950 |
gatcaaattgaaatatttgtttaaaagctgattcctgattcagtgatcatgcc |
26988002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 30230159 - 30230372
Alignment:
| Q |
8 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcacaaggcacaaattgtttctaatgattat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| | ||||||||| ||||| || | |
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| T |
30230159 |
atttggaggcatttgtatacattgtgggcaaaaggttgatggggaatctggtgtgtcgtttgggtatatacacaaggtaaaaattgtttgtaatgttttt |
30230258 |
T |
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| Q |
108 |
cttacagggtactaataacatagatttggatagttgttgttgctacatgtcgctattattttcgaatgactgttagatcaagttgaaatatttgttaaaa |
207 |
Q |
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||| || ||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30230259 |
ctt-ggggatactaataatatagatttggatagttgttgtttccgcatgtcgc---tattttcgaatgaatgttagatcaagttgaaatatttgttaaaa |
30230354 |
T |
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| Q |
208 |
agctaattcctgcttcag |
225 |
Q |
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|||||||||||| ||||| |
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| T |
30230355 |
agctaattcctgattcag |
30230372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 30232874 - 30233077
Alignment:
| Q |
8 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcacaaggcacaaattgtttctaatgattat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
30232874 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgttatttggctatatacacaaggtacaaattgtttctaatgattat |
30232973 |
T |
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| Q |
108 |
cttacagggtactaataacatagatttggatagttgttgttgctacatgtcgctattattttcgaatgactgttagatcaagttgaaatatttgttaaaa |
207 |
Q |
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||| || ||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||| ||| ||||||||||||||||| |||||| |
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| T |
30232974 |
ctt-ggggatactaataatttagatttggatagttgttgttgccgcatgtcgc---aattttctaatgactcttaaatcaagttgaaatatttattaaaa |
30233069 |
T |
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| Q |
208 |
agctaatt |
215 |
Q |
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|||||||| |
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| T |
30233070 |
agctaatt |
30233077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 34689836 - 34690057
Alignment:
| Q |
8 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcacaaggcacaaattgtttctaatgattat |
107 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||| ||||| |||| | ||||||| |
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| T |
34689836 |
atttggaggcatttgtatacattgtggacaaaaggtggatggggaatctggtgtgtcatttggctatatacataaggtacaaaaaatttcaattgattat |
34689935 |
T |
|
| Q |
108 |
cttacagggtactaataacatagatttggatagttgttgttgctacatgtcgctattattttcgaatgactgttagatcaagttgaaatatttgttaaaa |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||| ||||||||| |||||||||||||| ||| |
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| T |
34689936 |
ctt-gggggtactaataacatagatttggatagttgttgttgccatatgtcgc---tatttttgaatgac--ttagatcaaattgaaatatttgtttaaa |
34690029 |
T |
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| Q |
208 |
agctaattcctgcttcagcggtcatgcc |
235 |
Q |
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|||||||||||| ||||| | ||||||| |
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| T |
34690030 |
agctaattcctgattcagtgatcatgcc |
34690057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 50174754 - 50174655
Alignment:
| Q |
8 |
atttggaggcatttgtatacattgtgggcaaaaggtggatggggaatctggtgtgtcatttgggtatattcacaaggcacaaattgtttctaatgattat |
107 |
Q |
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|||||||| || ||||||| ||| ||||||||| |||||||||||||||| ||| |||||||||| || ||||||| | | ||||||||| |||||||| |
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| T |
50174754 |
atttggagagatgtgtatacgttgcgggcaaaagttggatggggaatctggcgtgacatttgggtacatacacaaggtatacattgtttctgatgattat |
50174655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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