View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723-Insertion-12 (Length: 180)
Name: NF5723-Insertion-12
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-12 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 9866524 - 9866670
Alignment:
| Q |
34 |
atatatatacttaccagtgtgtgttggtttccatcgaattcaaaggaatgaaaatgatttattctgttttttcctcttccggaattcctaaccggttcgt |
133 |
Q |
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| T |
9866524 |
atatatatatttacaagtgtgtgctggtttccattgaattcaaaggaatgaaaatgatttattctgttttatcctcttccggaattcctaaccggttcgt |
9866623 |
T |
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| Q |
134 |
caatgggtttagcatcctccaattgcggctcctcttcttctttctcc |
180 |
Q |
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| T |
9866624 |
caatgggtttagcatcctccaatggcggctcctcttcttctttctcc |
9866670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 9873937 - 9873760
Alignment:
| Q |
8 |
ccgaatgcgaagaaaaagaaaagttgatatatata------cttaccagtgtgtgttggtttccatcgaattcaaaggaatgaaaatgatttattctgtt |
101 |
Q |
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| T |
9873937 |
ccgaatgcgaagaaaaagaaaagttcatatatatatatatacttacaagtgtgtgttggtttccatcgaattcaaaggaatgaaaatgattttattt-tt |
9873839 |
T |
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| Q |
102 |
ttttcctcttccggaattcctaaccggttcgtcaatgggtttagcatcctccaattgcggctcctcttcttctttctcc |
180 |
Q |
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| T |
9873838 |
ttttcctctttcggaattcctaaccggttcgtcaatgggtttagcatcctccaatggcggctcctcttcttatttctcc |
9873760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 9886903 - 9886784
Alignment:
| Q |
61 |
tttccatcgaattcaaaggaatgaaaatgatttattctgttttttcctcttccggaattcctaaccggttcgtcaatgggtttagcatcctccaattgcg |
160 |
Q |
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| T |
9886903 |
tttccatcgaattgaaaggaatgaaaatgatttattctgttttttcctcttccggaatttctaaccggttcgtcaatgggtttagcatccaccaatggtg |
9886804 |
T |
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| Q |
161 |
gctcctcttcttctttctcc |
180 |
Q |
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| T |
9886803 |
gctcctcttcttctttctcc |
9886784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 9867300 - 9867138
Alignment:
| Q |
18 |
agaaaaagaaaagttgatatatatacttaccagtgtgtgttggtttccatcgaattcaaaggaatgaaaatg--atttattctgttttttcctcttccgg |
115 |
Q |
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| T |
9867300 |
agaacaagaaagattgatatatatacttacaagtgtgtattggttttcatcgaattgaaaggaatgaaaatgatatttattct-atttttcccattccgg |
9867202 |
T |
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| Q |
116 |
aattcctaaccggttcgtcaatgggtttagcatcctccaattgcggctcctcttcttctttctcc |
180 |
Q |
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| T |
9867201 |
aaaccctaacagg-gcgccaatgggtttagcatcctccaatggcggatgctcttcttctttctcc |
9867138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 9873181 - 9873299
Alignment:
| Q |
57 |
ttggtttccatcgaattcaaaggaatgaaaatgatttattctgttttttcctcttccggaattcctaaccggttcgtcaatgggtttagcatcctccaat |
156 |
Q |
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| T |
9873181 |
ttggtttctatcgaatttaaaagaatgaaaatgatttattttg-tttttcctattccggaaaccctaactgtttcgccaatgggtttaacattcttcaat |
9873279 |
T |
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| Q |
157 |
tgcggctcctcttcttcttt |
176 |
Q |
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| T |
9873280 |
ggcagctgctcttcttcttt |
9873299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 9886227 - 9886341
Alignment:
| Q |
68 |
cgaattcaaaggaatgaaaatgat---ttattctgttttttcctcttccggaattcctaaccggttcgtcaatgggtttagcatcctccaattgcggctc |
164 |
Q |
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|||||| ||||||||||||||||| ||||||| ||||| ||| | |||||| |||||| |||||| ||| ||||||| |||| | |||| |||||| |
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| T |
9886227 |
cgaatttaaaggaatgaaaatgatcatttattctattttt-cctataccggaaaccctaacaggttcgccaaagggtttaacatcttgcaatggcggctg |
9886325 |
T |
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| Q |
165 |
ctcttcttctttctcc |
180 |
Q |
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| T |
9886326 |
ctgttcttctttctcc |
9886341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 40956750 - 40956613
Alignment:
| Q |
38 |
atatacttaccagtgtgtgttggtttccatcgaattcaaaggaatgaaaatgatttattctgttttttcctcttccggaattcctaaccggttcgtcaat |
137 |
Q |
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|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||| |||| | |||| |
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| T |
40956750 |
atatacttacaagtgtgtactggtttccatcaaattcaaaggaatgaaaatgattgattttgttttttcctcttctggaaaccctaactggtttgccaat |
40956651 |
T |
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| Q |
138 |
gggtttagcatcctccaattgcggctcctcttcttctt |
175 |
Q |
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| T |
40956650 |
gggtttagcatcctccaaaggcggctcctcttcttctt |
40956613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 40943793 - 40943704
Alignment:
| Q |
57 |
ttggtttccatcgaattcaaaggaatgaaaatgatttattctgttttttcctcttccggaattcctaaccggttcgtcaatgggtttagc |
146 |
Q |
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||||| ||||||||| |||||||| |||||||||||| ||||| | ||||| |||| ||| |||||| ||||| ||||||||||||| |
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| T |
40943793 |
ttggtctccatcgaagtcaaaggactgaaaatgattttttctgcctcttccttttccagaaaacctaacgggttcaccaatgggtttagc |
40943704 |
T |
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