View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723-Insertion-13 (Length: 171)
Name: NF5723-Insertion-13
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 39738453 - 39738285
Alignment:
| Q |
7 |
accaccaacgactattttttctttattcttcttc------attatcttcaacatcaccgtcatcgatcttcatnnnnnnnnnnnnnnnnnttcatcaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
39738453 |
accaccaacgactattttttctttattcttcttcttcttcattatcttcaacatcaccgtcatcgattttcataaaaaaaactaaaaa--ttcatcaaca |
39738356 |
T |
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| Q |
101 |
acaaccatcatcatctcatcactatatcatgtcaccatgtggcacattcattatatttgttgtgtcatttt |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39738355 |
acaaccatcatcatctcatcactatatcatgtcaccatgtggcacattcattatatttgttgtgtcatttt |
39738285 |
T |
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