View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5723-Insertion-2 (Length: 1051)
Name: NF5723-Insertion-2
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-2 |
 | |
|
| [»] scaffold0929 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 33656738 - 33657190
Alignment:
| Q |
12 |
aaagatactatttgctaatttactctcacattaagatatttgtcatgtctattagtaaagcttccgtgtaaaattggacggatgtgggaaaaaatagcgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33656738 |
aaagatactatttgctaatttactctcacattaagatatttgtcatgtctattagtaaaacttccgtgtaaaattggacggatgtgggaataaatagcgg |
33656837 |
T |
|
| Q |
112 |
aaaatagatgtgtgaaattcctccatgtttaccacaaggaagtttaattaagagcaatgatgaacgaaataaaggccgagacaccagtatgattatgaga |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33656838 |
aaaatagatgtgtgaaattcctccacgtttaccacaaggaagtttaattaagagcaatgatgaacgaaataaaggcagagacaccagtatgattatgaga |
33656937 |
T |
|
| Q |
212 |
tcccatccataccttctgcttcatttgatcgacttgaaccttcaatctgcacaatctccttttctatggtcacaaacctctctataacttctggagtgct |
311 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33656938 |
tcccgtccataccttctgcttcatttgattgacttgaaccttcaatctgcacaatctccttttctatggtcacaaacctctctataacttctggagtgct |
33657037 |
T |
|
| Q |
312 |
tacaaatctaacaaacctatgtaaacaaaccaaaacaaacacacatcactagtcttatagtattaatcca-nnnnnnnatataacaactcacaccatagt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
33657038 |
tacaaatctaacaaacctatgtaaacaaaccaaaacaaacacacatcactagtcttatagtattaatctattttttttatataacaactcacaccatagt |
33657137 |
T |
|
| Q |
411 |
tttaaattgtagcgacaatataaaggatgctgagacagccaaaaccgcaacgc |
463 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33657138 |
tttaaattgtagcgacaatataaaggatgttgagacagccaaaaccgcaacgc |
33657190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 457 - 950
Target Start/End: Original strand, 33657207 - 33657705
Alignment:
| Q |
457 |
gcaacgctttcatgcaacttttcgcaatgtcaaggatcacgacataactgtcaccacaatttaattaaaaccttgatccgccctgttaactaaaagagga |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33657207 |
gcaacgctttcatgcaacttttcgcaatgtcaaggatcatgacataattgtcaccgcaatttaattaaaaccttgatccgccctggtaactaaaagagga |
33657306 |
T |
|
| Q |
557 |
ttaatccttggtgagatnnnnnnn-ctcacatttttctacattgagaacacttt-caaggatttaatttatattcgtgtaaaagtaaatctattcacact |
654 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33657307 |
ttaatccttggtgagataaaaaaaactcacatttttctacattgagaacacttttcaaggatttaatttatattcgtgtaaaagtaaatccattcacact |
33657406 |
T |
|
| Q |
655 |
gccaatcaatcataaccgtcaaatcattgaaaatatttaactttaaccataactatttttaaagtcactcataccagtgattgtgatttgtcgactacga |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33657407 |
atcaatcaatcataaccgtcaaatcattgaaaatatttgactttaaccataactatttttaaagtcactcatattagtgattgtgatttgtcgactacga |
33657506 |
T |
|
| Q |
755 |
tcaaaatgtatgaaaatttaagttcactttcaatccaatctatc-aaaaccaataattgttac-aaaaccaaaagagaacaagnnnnnnnncctttgcag |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
33657507 |
tcaaaatgtatgaaaatttaagttcactttcaatccaatctatcaaaaaccaataattgttacaaaaaccaaaagagaacaag-aaaaaaacctttgcag |
33657605 |
T |
|
| Q |
853 |
ggtggctttggtgaaccatggagcatatgtaggttcaggacataaagtgatggaatagccaccttttgaaatctgatcttt-gcacattt-agatgagaa |
950 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
33657606 |
ggtggctttggtgaaccatggagcatatgtagattcaggacataaagtgatggaatagccaccttttgaaatctgatctttggcacatttaagatgagaa |
33657705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 650 - 717
Target Start/End: Original strand, 14004328 - 14004395
Alignment:
| Q |
650 |
acactgccaatcaatcataaccgtcaaatcattgaaaatatttaactttaaccataactatttttaaa |
717 |
Q |
| |
|
|||||| ||||||||||||| ||| | |||||| |||||| || ||||||| |||||||||||||||| |
|
|
| T |
14004328 |
acactgtcaatcaatcataatcgtgagatcatttaaaataattgactttaatcataactatttttaaa |
14004395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 657 - 746
Target Start/End: Complemental strand, 4076094 - 4076004
Alignment:
| Q |
657 |
caatcaatcataaccgtcaaatcattgaaaatatttaactttaaccataacta-tttttaaagtcactcataccagtgattgtgatttgtc |
746 |
Q |
| |
|
||||||||||||| ||| | |||||||||| |||| |||||| ||||||||| || |||||||||| |||| |||| |||||||||||| |
|
|
| T |
4076094 |
caatcaatcataatcgttagatcattgaaagcatttgactttagccataactagttcttaaagtcacacatatgagtggttgtgatttgtc |
4076004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 657 - 722
Target Start/End: Original strand, 19345942 - 19346007
Alignment:
| Q |
657 |
caatcaatcataaccgtcaaatcattgaaaatatttaactttaaccataactatttttaaagtcac |
722 |
Q |
| |
|
||||||||||| | |||||||| || ||||||||||||||||| |||| || |||||||||||| |
|
|
| T |
19345942 |
caatcaatcatgatcgtcaaattataaaaaatatttaactttaataataattaattttaaagtcac |
19346007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 651 - 721
Target Start/End: Original strand, 1472590 - 1472660
Alignment:
| Q |
651 |
cactgccaatcaatcataaccgtcaaatcattgaaaatatttaactttaaccataactatttttaaagtca |
721 |
Q |
| |
|
||||| ||||||||||||| | ||| || ||||||||| ||||||||||||||||| | ||| |||||||| |
|
|
| T |
1472590 |
cactggcaatcaatcataatcatcagattattgaaaatgtttaactttaaccataattgtttctaaagtca |
1472660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 684 - 721
Target Start/End: Original strand, 4778504 - 4778541
Alignment:
| Q |
684 |
aaaatatttaactttaaccataactatttttaaagtca |
721 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4778504 |
aaaatatttaactttaaccataattatttttaaagtca |
4778541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 677 - 719
Target Start/End: Original strand, 35341539 - 35341581
Alignment:
| Q |
677 |
atcattgaaaatatttaactttaaccataactatttttaaagt |
719 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
35341539 |
atcattaaaaacatttaactttaatcataactatttttaaagt |
35341581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 659 - 721
Target Start/End: Complemental strand, 36038152 - 36038088
Alignment:
| Q |
659 |
atcaatcataaccgtc--aaatcattgaaaatatttaactttaaccataactatttttaaagtca |
721 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
36038152 |
atcaatcataaccgtcgaaaatcattgaaaatatttaattttatttataattatttttaaagtca |
36038088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 675 - 743
Target Start/End: Complemental strand, 3982 - 3914
Alignment:
| Q |
675 |
aaatcattgaaaatatttaactttaaccataactatttttaaagtcactcataccagtgattgtgattt |
743 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||||||||||||| ||| | | ||||| |||||| |
|
|
| T |
3982 |
aaatcattaaaaatatttgactttaagtataactatttttaaagtcacacatgcaaatgattatgattt |
3914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 675 - 743
Target Start/End: Complemental strand, 6366251 - 6366183
Alignment:
| Q |
675 |
aaatcattgaaaatatttaactttaaccataactatttttaaagtcactcataccagtgattgtgattt |
743 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||||||||||||| ||| | | ||||| |||||| |
|
|
| T |
6366251 |
aaatcattaaaaatatttgactttaagtataactatttttaaagtcacacatgcaaatgattatgattt |
6366183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 688 - 717
Target Start/End: Complemental strand, 17177662 - 17177633
Alignment:
| Q |
688 |
tatttaactttaaccataactatttttaaa |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17177662 |
tatttaactttaaccataactatttttaaa |
17177633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University