View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723-Insertion-3 (Length: 918)
Name: NF5723-Insertion-3
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 757; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 8 - 781
Target Start/End: Original strand, 36716945 - 36717720
Alignment:
| Q |
8 |
gagagaaggagggagagacagggaactgaggaaattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattct |
107 |
Q |
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| T |
36716945 |
gagagaaggagggagagacagggaactgaggaaattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattct |
36717044 |
T |
|
| Q |
108 |
ctgctgctattggatcttcttcacgcgtccacaaaaaatcaccaaaatcctgcatcaagctgaaaacaccttatggaagtaaagttccaaaaatcatcat |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717045 |
ctgctgctattggatcttcttcacgcgtccacaaaaaatcaccaaaatcctgcatcaagctgaaaacaccttatggaagtaaagttccaaaaatcatcat |
36717144 |
T |
|
| Q |
208 |
tgacattgcaaaacttcctgctgctgaagatggtgaatctgagcttctgactcctcagaagaagctattgcattcaattgatataattgagcgtgaagtg |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36717145 |
tgacattgcaaaacttcctgctgctgaagatggtgaatctgagcttctgactcctcagaagaagctattgcattcgattgatataattgagcgtgaagtg |
36717244 |
T |
|
| Q |
308 |
aagcaagagttgatgaaactcaagagaacccttacagccaaaaaagcagaacatcagaaaagggttaggaccttgatgtccatgaggtgaattgaagaag |
407 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717245 |
aagcaagagttgatgaaactcaagagaacccctacagccaaaaaagcagaacatcagaaaagggttaggaccttgatgtccatgaggtgaattgaagaag |
36717344 |
T |
|
| Q |
408 |
atttaaagtgcaggaaaaaatt--agagaattgaaggagaaatcttagagcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgattta |
505 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717345 |
atttaaagtgcaggaaaaaattaaagagaattgaaggagaaatcttagagcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgattta |
36717444 |
T |
|
| Q |
506 |
tagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatagctgtatacattttagatttttccttg |
605 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717445 |
tagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatagctgtatacattttagatttttccttg |
36717544 |
T |
|
| Q |
606 |
catcatcattctttgatgattttgttgcaattttggtgtaatccattgtatatattacaatgtatgactatagttttgaatcgaatgacacctatttctt |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717545 |
catcatcattctttgatgattttgttgcaattttggtgtaatccattgtatatattacaatgtatgactatagttttgaatcgaatgacacctatttctt |
36717644 |
T |
|
| Q |
706 |
ttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgattg |
781 |
Q |
| |
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| T |
36717645 |
ttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgattg |
36717720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 1482157 - 1482500
Alignment:
| Q |
8 |
gagagaaggagggagagacagggaactgaggaaattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattct |
107 |
Q |
| |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1482157 |
gagagaaggagggagagactgggaactgaggagattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattct |
1482256 |
T |
|
| Q |
108 |
ctgctgctattggatcttcttcacgcgtccacaaaaaatcaccaaaatcctgcatcaagctgaaaacaccttatggaagtaaagttccaaaaatcatcat |
207 |
Q |
| |
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|||||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1482257 |
ctgctgcttttggatcttcttcacgtgtccacaagaaatcaccaaaatcctgcataaagctgagtacaccttatggaagtaaagttccaaaaatcatcat |
1482356 |
T |
|
| Q |
208 |
tgacattgcaaaacttcctgctgctgaagatggtgaatctgagcttctgactcctcagaaga---agctattgcattcaattgatataattgagcgtgaa |
304 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
1482357 |
cgacattgcgaaacttcctgctgctgaagatggtgaatcagagcttctgactcctcagaagaagcagctattgcattcgattgatataattgagcgtgaa |
1482456 |
T |
|
| Q |
305 |
gtgaagcaagagttgatgaaactcaagagaacccttacagccaa |
348 |
Q |
| |
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| T |
1482457 |
gttaagcaatagttgatgaaactaaaaagaacccctacagccaa |
1482500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 383 - 779
Target Start/End: Original strand, 1482592 - 1482985
Alignment:
| Q |
383 |
atgtccatgaggtgaattgaagaagatttaaagtgcaggaaaaa-att--agagaattgaaggagaaatcttagagcaaatgggaaaggagatttgggct |
479 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |||| ||| ||| | |||||||||| ||| ||||||||| || |||||||||||||||| |
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| T |
1482592 |
atgtccatgaggtgaattgaaaaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatttgggct |
1482691 |
T |
|
| Q |
480 |
gagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatag |
579 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| || |||| | || ||||||||| ||||||||||| || |
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| T |
1482692 |
gagcttaatcatcttctgatgatttatagggatccaa------aagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
1482785 |
T |
|
| Q |
580 |
ctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccattgtatatattacaatgtatgactatagt |
679 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
1482786 |
ctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtatatattacaatgtatgactataat |
1482885 |
T |
|
| Q |
680 |
tttgaatcgaatgacacctatttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgat |
779 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||| |
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| T |
1482886 |
tttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattacttgat |
1482985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 802 - 918
Target Start/End: Original strand, 36717747 - 36717857
Alignment:
| Q |
802 |
ctgagaggaagcgtggaaggaaagtgtagctgtgtagatgtatgcatggttgggtaagggttattgggagttgctgggcaaaatgtgtattgaatcaaat |
901 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36717747 |
ctgagaggaagcgtggaaggaaagtgtagctgtgta------tgcatggttgggtaagggtttttgggagttgctgggcaaaatgtgtattgaatcaaac |
36717840 |
T |
|
| Q |
902 |
caatgtgtgggatttaa |
918 |
Q |
| |
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|||||||| |||||||| |
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| T |
36717841 |
caatgtgtaggatttaa |
36717857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 560 - 628
Target Start/End: Original strand, 1483261 - 1483329
Alignment:
| Q |
560 |
cttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgatttt |
628 |
Q |
| |
|
|||| |||||||||||| || |||| |||||||| ||||||||||||| ||||||||| |||||||||| |
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|
| T |
1483261 |
cttccacttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 691
Target Start/End: Original strand, 36717995 - 36718065
Alignment:
| Q |
622 |
tgattttgttgcaattttggtgtaatccattgtatatattac-aatgtatgactatagttttgaatcgaat |
691 |
Q |
| |
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|||| |||||||||||| ||||||||||||||| |||||||| ||||||| || | | ||||||||||||| |
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| T |
36717995 |
tgatcttgttgcaatttaggtgtaatccattgtctatattacaaatgtatcacaacaattttgaatcgaat |
36718065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 833 - 918
Target Start/End: Original strand, 1483018 - 1483103
Alignment:
| Q |
833 |
gtgtagatgtatgcatggttgggtaagggttattgggagttgctgggcaaaatgtgtattgaatcaaatcaatgtgtgggatttaa |
918 |
Q |
| |
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|||||| |||||||||||| | ||| |||| | ||||||||||||| |||||||| |||||| ||||| | ||||| |||||||| |
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| T |
1483018 |
gtgtaggtgtatgcatggtcagctaatggttttagggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggatttaa |
1483103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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