View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5723-Insertion-6 (Length: 651)

Name: NF5723-Insertion-6
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5723-Insertion-6
NF5723-Insertion-6
[»] chr2 (1 HSPs)
chr2 (8-651)||(278947-279578)


Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Original strand, 278947 - 279578
Alignment:
Q  8 agttttcctaactggaactggttttggtgtttgagggaatgagaaaaaatctatggatcttgatttgtgggtatcaatcttagaataagcattcattttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  278947 agttttcctaactggaactggttttggtgtttgagggaatgagaaaaaatctatggatcttgatttgtgggtatcaatcttagaataagcattcattttc 279046  T
Q  108 agatatagtactatgtatagtagatagagg-----tatacacaagagagtgtgaatggtggtagctatataatgaggaggacctaaaccaaaccaaacca 202  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||     |||| ||||||    
T  279047 agatatagtactatgtatagtagatagaggtgagttatacacaagagagtgtgaatggtggtagctatataatgaggaggacct-----aaacaaaacca 279141  T
Q  203 aataatagtttgactaaattgtcggattcatgaaggaagtgaat---agtaatagatgaattgagacctctctctctttcacatgataatcactcactct 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  279142 aataatagtttgactaaattgtcggattcatgaaggaagtgaatagaagtaatagatgaattgagacctctctctctttcacatgataatcactcactct 279241  T
Q  300 attgttttgttgtgtagtgtagtgtagtgtcatcataatagtaaatgaaaggtagatttagaatttgaggtaaatttccaaggataggtagctcagtagc 399  Q
    |||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  279242 attgttttgtt-----gtgtagtgtagtgtcatcataatagtaaatgaaaggtagatttagaatttgaggtaaatttccaaggatag--------gtagc 279328  T
Q  400 tgaatacgagacccaccgtgaatgacttgggaatttcatttttccaaagtaaaacaaaacattcccaatacaacgag--ttttacacgcatggtcaaggc 497  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| ||    
T  279329 tgaatacgagacccaccgtgaatgacttgggaatttca-ttttccaaagtaaaacaaaacattcccaatacaatgagttttttacacgcatggtcaaagc 279427  T
Q  498 agtaaattattgaagggagtaaggttttaaccataattgtcggttgacgtcagaggaatgccagaatgacattggaactggacctaacgtgttctcatgt 597  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  279428 agtaaattattgaaggtagtaaggttttaaccataattgtcggttgacgt---aggaatgccagaatgacattggaactggacctaacgtgttctcatgt 279524  T
Q  598 gacgttttcgccaattttgcatctaactcaccttaggattttgtactaatatca 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  279525 gacgttttcgccaattttgcatctaactcaccttaggattttgtactaatatca 279578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University