View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723-Insertion-7 (Length: 626)
Name: NF5723-Insertion-7
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 451131 - 450831
Alignment:
| Q |
8 |
agattaactcatagataagttactcataaatgcatttttgtcacaatttcctttacaataaagcaaacaagaaaatagataatcaaactcatcaagaatg |
107 |
Q |
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| T |
451131 |
agattaactcatagataagttactcataaatgcatttttgtcacaatttcctttacaataaagcaaacaagaaactagataatcgaactcatcaagaatg |
451032 |
T |
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| Q |
108 |
ttagatctagtttagaaagttcataatgatgatgatgatgacggcaacggcgaagacgatgatgataacaacaacaacaacttgccatggtgatgtaagg |
207 |
Q |
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| T |
451031 |
ttagatctagtttagaaagttcataatgatgatgatgatgacggcgacggcgaagacgatgatgataacaacaacaacaac-----------------gg |
450949 |
T |
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| Q |
208 |
catatatgcacatacatttttatcaaataagttcccccctcaaaacaaaatgcatcggatgcacaatgtaaatcaaagctgggagcacacttactcatag |
307 |
Q |
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| T |
450948 |
catatatgaacatacatttttatcaaataagttcccccctcaaaacaaaatgcatcggatgcacaatgtaaatcaaagatgggagcacacttactcatag |
450849 |
T |
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| Q |
308 |
agcttctgaaaatttaga |
325 |
Q |
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| T |
450848 |
agcttctgaaaatttaga |
450831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 9335304 - 9335345
Alignment:
| Q |
84 |
agataatcaaactcatcaagaatgttagatctagtttagaaa |
125 |
Q |
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| T |
9335304 |
agataatcaaactcatcaacaatgttacatctagtttagaaa |
9335345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 9340111 - 9340161
Alignment:
| Q |
84 |
agataatcaaactcatcaagaatgttagatctagtttagaaagttcataat |
134 |
Q |
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| T |
9340111 |
agataatcaaacccaacaacattgttacatctagtttagaaagttcataat |
9340161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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