View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723-Insertion-9 (Length: 229)
Name: NF5723-Insertion-9
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 14452506 - 14452297
Alignment:
| Q |
7 |
agaatgctcacctgacttcatccatgtctggctcagttcactacaagcctacagtgtgtataggacatcagttacacacagaaatctcttagcagaacta |
106 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14452506 |
agaatgctcacctgactccatccatgtctggctcagttcactacaagcctacagtgtgtataggacatcagttacacacagaaatctcttagcagaacta |
14452407 |
T |
|
| Q |
107 |
aaaagaagagaattgaaaacgtaaggttaggcagcgggacttaagtccggtggnnnnnnnnnnccgctagttgtagacagcacaagttaactcaggctcg |
206 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14452406 |
aaaagaagagaattgaaaatgtaaggttaggcagagggacttaagtccggtggttttttttttccgctagttgtagacagcacaagttaactcaggctcg |
14452307 |
T |
|
| Q |
207 |
tcatccagag |
216 |
Q |
| |
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|||||||||| |
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| T |
14452306 |
tcatccagag |
14452297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 45492462 - 45492581
Alignment:
| Q |
7 |
agaatgctcacctgacttcatccatgtctggctcagttcactacaagcctacagtgtgtataggacatcagttacacacagaaatctcttagcagaacta |
106 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
45492462 |
agaatgctcacctgactccatccatgtctggctcagttcattacaagcctgcagtgtgtataggaagttagttacacacagcaatctcttagcagaactg |
45492561 |
T |
|
| Q |
107 |
aaaagaagagaattgaaaac |
126 |
Q |
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||||||||| || ||||||| |
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| T |
45492562 |
aaaagaagataaatgaaaac |
45492581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 19856977 - 19856858
Alignment:
| Q |
7 |
agaatgctcacctgacttcatccatgtctggctcagttcactacaagcctacagtgtgtataggacatcagttacacacagaaatctcttagcagaacta |
106 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| || | |||||||||||| ||||||||||||||||| |
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| T |
19856977 |
agaatgctcacctgactccatccatgtctggctcagttcattacaagcctgcagtgtgtataagaagttagttacacacagcaatctcttagcagaactg |
19856878 |
T |
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| Q |
107 |
aaaagaagagaattgaaaac |
126 |
Q |
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|||||||| || ||||||| |
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| T |
19856877 |
taaagaagataaatgaaaac |
19856858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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