View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_high_19 (Length: 256)
Name: NF5723_high_19
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 6490601 - 6490840
Alignment:
| Q |
1 |
tttcaagaaaacaagttcagacagactataagttgaaactgatagagcagaagtttatgtggctaggattaatatttctatgcttgatattggagcagaa |
100 |
Q |
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| T |
6490601 |
tttcaagaaaacaagttcaga----ctataagttgaaactgatagagcagaagtttatgtggctaggattaatatttctatgcttgatattggagcagaa |
6490696 |
T |
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| Q |
101 |
aattgtgtcttccgttaacatgttgcaatatttagttcctgtacagtaaaaacaagtccgtgtcttctacttctaatcttgtatacatgattgtttaact |
200 |
Q |
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| T |
6490697 |
aattgcgtcttccgttaacatgttgcaatatttagttcatgtacagtaaaaacaagtccatgtcttctacttctaatcttgtatacatgattgtttaact |
6490796 |
T |
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| Q |
201 |
ttgacgtacaattgtacttctacagaagctggaggtattgtctc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490797 |
ttgacgtacaattgtacttctacagaagctggaggtattgtctc |
6490840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38700080 - 38699841
Alignment:
| Q |
1 |
tttcaagaaaacaagttcagacagactataagttgaaactgatagagcagaagtttatgtggctagga------ttaatatttctatgcttgatattgga |
94 |
Q |
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| T |
38700080 |
tttcaagaaaacaagt---gtcaggctataaattgaaactgatagtgcagaaatttatgtggctaggcctagggttaatatttctatgcttgagattgga |
38699984 |
T |
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| Q |
95 |
gcagaaaattgtgtcttccgttaacatgttgcaatatttagttcctgtacagtaaaaacaagtccgtgtcttctacttctaatcttgtatacatgattgt |
194 |
Q |
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| T |
38699983 |
gcagaaaattgcgtcttccgttaacatgctgcaatattgagttcc-ctacagtaaaaacaagtccgtgtcttcaacttctaatct--tatacatgattgt |
38699887 |
T |
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| Q |
195 |
ttaactttgacgtacaattgtacttctacagaagctggaggtattgtctc |
244 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38699886 |
ttaactttg----acaattgtacttctacagaagctggaggtattgtctc |
38699841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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