View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_high_22 (Length: 244)
Name: NF5723_high_22
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 26381147 - 26381362
Alignment:
| Q |
18 |
agagttgattcttatgaacgaataataaa-tttaaaagaaaattgcatgtcttaaatctatgtcattgtcaaggacccaagatcaataagtgtttgcatg |
116 |
Q |
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| T |
26381147 |
agagttggttcttatgaacgaataataaagtttaaaagaaaattgcatgtcttaaatctatgtcattgtcaaggacccaagatcaataagtgtttgcatg |
26381246 |
T |
|
| Q |
117 |
ttttaagagctacatgagaatttcatgaattctcaagagcttaatttttctcttttagattaatgttgcttgtgcatatcagctttggcataatgcttaa |
216 |
Q |
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| T |
26381247 |
ttttaagagctacatgagaatttcatgaattctcaacagcttattttttctcttttagattaatgttgcttgtgcatatcagctttggcataatgcttaa |
26381346 |
T |
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| Q |
217 |
agtttgttagcctatg |
232 |
Q |
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| T |
26381347 |
agtttgttagtctatg |
26381362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 21041199 - 21041055
Alignment:
| Q |
38 |
aataataaatttaaaagaaaattgcatgtcttaaatctatgtcattgtcaaggacccaagatcaataagtgtttgcatgttttaagagctacatgagaat |
137 |
Q |
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| T |
21041199 |
aataatacgtttaaaaaaaaattgcatatcttaaatctatgtcattgtcaag-acccaagatcaataagtgtgtgcttgttttaagagctacatgagaat |
21041101 |
T |
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| Q |
138 |
ttcatgaattctcaagagcttaatttttctcttttagattaatgtt |
183 |
Q |
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| T |
21041100 |
ttcatggattctcaacagtttaatttttctcttttagattaatgtt |
21041055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 21041010 - 21040971
Alignment:
| Q |
193 |
tatcagctttggcataatgcttaaagtttgttagcctatg |
232 |
Q |
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| T |
21041010 |
tatcagctttggcataatgcttaaagtttgttagtctatg |
21040971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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