View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_high_25 (Length: 239)
Name: NF5723_high_25
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_high_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 34748674 - 34748453
Alignment:
| Q |
18 |
agcataagcacgtgttccattatagctgcaaaaaccattgagtatttaaatttagtgtaattgaaattgttcatacttttacaaataagaaagtacttgt |
117 |
Q |
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| T |
34748674 |
agcataagcacgtgttccattatagctgcaaaaaccattgagtatttaaatttagtgtaattgaaattgttcatactttaacaaataagaaagtacttgt |
34748575 |
T |
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| Q |
118 |
acttttttccattgagtatatctttgaaacaaaaaccatgtctcttcacccagctatgtatgacggaagaaacgtttattattcttccttgaatatctgt |
217 |
Q |
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| T |
34748574 |
acttttttccattgagtatatctttgaaacaaaaaccatgtctcttcacccagctatgtatgacagaagaaacgtttattattcttccttgaatatctgt |
34748475 |
T |
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| Q |
218 |
cttcttggacgtttctatcatt |
239 |
Q |
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| T |
34748474 |
cttcttggacgtttctatcatt |
34748453 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 43691474 - 43691378
Alignment:
| Q |
115 |
tgtacttttttccattgagtatatctttgaaacaaaaaccatgtctcttcacccagctatgtatgacggaagaaacgtttattattcttccttgaat |
211 |
Q |
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| T |
43691474 |
tgtacttttttccagtgagcatgtctttaaaacaaaagcaacttcttttcacccagctatgaattactgaagaaatatttattattcttccttgaat |
43691378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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