View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_high_28 (Length: 238)
Name: NF5723_high_28
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_high_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 7422340 - 7422118
Alignment:
| Q |
16 |
gatagtatatatagtactccaaatgataagaaatggcatggatcataaaaacgaagcttggcgagtcaagtacgtctttcctttacannnnnnnnnnnat |
115 |
Q |
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| T |
7422340 |
gatagtatatatagtactccaaatgataagaaatggcatggatcataaaaacgaagcttggcgagtcaagtacgtctttcctttacatttttttttttat |
7422241 |
T |
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| Q |
116 |
atatttcgaattgtttattgttttttaagcaaatactttaaattaacctaatttcttactatttaattacgagtctgagcaaatgaaaagagtacagaaa |
215 |
Q |
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| T |
7422240 |
atatttcgaattgtttattgttttttaagcaaatactttaaattaacctaatttcttactatttaattacgagtctgagcaaatgaaaagagtacagaaa |
7422141 |
T |
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| Q |
216 |
aagaatcaaaggagaataaaaac |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
7422140 |
aagaatcaaaggagaataaaaac |
7422118 |
T |
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