View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5723_high_8 (Length: 379)

Name: NF5723_high_8
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5723_high_8
NF5723_high_8
[»] chr2 (6 HSPs)
chr2 (124-367)||(27077604-27077848)
chr2 (124-367)||(26987452-26987698)
chr2 (292-367)||(27027002-27027077)
chr2 (19-79)||(27077495-27077555)
chr2 (137-209)||(27027111-27027183)
chr2 (19-79)||(26987731-26987791)
[»] chr7 (3 HSPs)
chr7 (124-367)||(30232540-30232784)
chr7 (126-367)||(30229829-30230066)
chr7 (19-86)||(30230096-30230163)
[»] chr6 (2 HSPs)
chr6 (124-331)||(34689538-34689747)
chr6 (19-79)||(34689780-34689840)
[»] chr4 (1 HSPs)
chr4 (152-203)||(50174850-50174901)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 124 - 367
Target Start/End: Original strand, 27077604 - 27077848
Alignment:
Q  124 tacaacatttttaagagtgacaaaattgtatgtgattcataatcatattttcataaacatttgaaaagattttgcataatgtaagagcctttagaaataa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27077604 tacaacatttttaagagtgacaaaattgtatgtgattcataatcatattttcataaacatttgaaaagattttgcataatgtaagagcctttagaaataa 27077703  T
Q  224 atttacggtattgttatacaatggaccaaagaaaatgtagtat-tggtgtgagatatttgagtgtgcatgcatgcatcattagttcatttctctataaga 322  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27077704 atttacggtattgttataaaatggaccaaagaaaatgtagtatgtggtgtgagaaatttgagtgtgcatgcatgcatcattagttcatttctctataaga 27077803  T
Q  323 aacaaaagcctccgttaataaaaaatcaatactgtttaatgatga 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27077804 aacaaaagcctccgttaataaaaaatcaatactgtttaatgatga 27077848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 124 - 367
Target Start/End: Complemental strand, 26987698 - 26987452
Alignment:
Q  124 tacaacattttta----agagtgacaaaattgtatgtgattcataatcatattttcataaacattt-gaaaagattttgcataatgtaagagcctttaga 218  Q
    |||||||||||||    ||||||||||| |||||||||||||||||||||||||||| ||| |||| ||| ||||||||| |||| ||||||||||||||    
T  26987698 tacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaatatttggaagagattttgcgtaatctaagagcctttaga 26987599  T
Q  219 aataaatttacggtattgttatacaatggaccaaagaaaatgtagtat-tggtgtgagatatttgagtgtgcatgcatgcatcattagttcatttctcta 317  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||| |||||||| ||    |||||||||||||||||||||||||||    
T  26987598 aataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattg----tgcatgcatcattagttcatttctcta 26987503  T
Q  318 taagaaacaaaagcctccgttaat-aaaaaatcaatactgtttaatgatga 367  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  26987502 taagaaacaaaagcctccgtaaataaaaaaatcaatattgtttaatgatga 26987452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 27027077 - 27027002
Alignment:
Q  292 gcatgcatcattagttcatttctctataagaaacaaaagcctccgttaataaaaaatcaatactgtttaatgatga 367  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  27027077 gcatgcatcattagttcatttctctataagaaacaacagcctccttaaataaaaaatcaatactgtttaatgatga 27027002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27077495 - 27077555
Alignment:
Q  19 caaatgagccagggtgcatgcatacatctacattcacagatgacactgcaacaattaagta 79  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27077495 caaatgatccagggtgcatgcatacatctacattcacagatgacactgcaacaattaagta 27077555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 27027183 - 27027111
Alignment:
Q  137 agagtgacaaaattgtatgtgattcataatcatattttcataaacatttgaaaagattttgcataatgtaaga 209  Q
    ||||||||||| |||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||    
T  27027183 agagtgacaaagttgtatgttattcatattcatattttcacaaatatttgaaaagattttgcataatctaaga 27027111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 26987791 - 26987731
Alignment:
Q  19 caaatgagccagggtgcatgcatacatctacattcacagatgacactgcaacaattaagta 79  Q
    ||||||| ||||| ||||| ||| ||||||||||||||||||| ||| |||||||||||||    
T  26987791 caaatgatccaggatgcatacatccatctacattcacagatgatactccaacaattaagta 26987731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 124 - 367
Target Start/End: Complemental strand, 30232784 - 30232540
Alignment:
Q  124 tacaacattttta----agagtgacaaaattgtatgtgattcataatcatattttcataaacatttgaaaagattttgcataatgtaagagcctttagaa 219  Q
    |||||||||||||    ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  30232784 tacaacatttttaagacagagtgacaaagttgtatgtgattcataataatattttcacaaacatttgaaaagattttgcataatctaagagcctttagaa 30232685  T
Q  220 ataaatttacggtattgttatacaatggaccaaagaaaatgtagtat-tggtgtgagatatttgagtgtgcatgcatgcatcattagttcatttctctat 318  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||| ||    ||||||||||||||||||||||||||||    
T  30232684 atcaatttacggtattgttatacaatggactaaagaaaatgtagtatgaggtgtgagatatttgattg----tgcatgcatcattagttcatttctctat 30232589  T
Q  319 aagaaacaaaagcctccgttaataaaaaatcaatactgtttaatgatga 367  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  30232588 aagaaacaaaagcctccgtaaataaaaaatccatactatttaatgatga 30232540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 126 - 367
Target Start/End: Complemental strand, 30230066 - 30229829
Alignment:
Q  126 caacatttttaagagtgacaaaattgtatgtgattcataatcatattttcataaacatttgaaaagattttgcataatgtaagagcctttagaaataaat 225  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||| | | | ||||||    
T  30230066 caacatttttaagagtgacaaagttgtatgtgattcataatcatattttcacaaaaatttcaaaagattttgcataatctaagagccat-atatataaat 30229968  T
Q  226 ttacggtattgttatacaatggaccaaagaaaatgtagtatt-ggtgtgagatatttgagtgtgcatgcatgcatcattagttcatttctctataagaaa 324  Q
    || ||||||| |||||||||||||||||||||| |||||||  |||||| ||||||||| |||||||||||     ||||||||||||||||||||||||    
T  30229967 ttgcggtatttttatacaatggaccaaagaaaaggtagtatgaggtgtgcgatatttgattgtgcatgcata----attagttcatttctctataagaaa 30229872  T
Q  325 caaaagcctccgttaataaaaaatcaatactgtttaatgatga 367  Q
    ||||||||||| | ||||||||| | |||||||||||||||||    
T  30229871 caaaagcctccataaataaaaaaaccatactgtttaatgatga 30229829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 30230163 - 30230096
Alignment:
Q  19 caaatgagccagggtgcatgcatacatctacattcacagatgacactgcaacaattaagtaataacat 86  Q
    ||||||| ||||| ||| | ||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  30230163 caaatgatccaggatgcgtacatccatctacattcacagatgatactgcaacaattaagtattaacat 30230096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 124 - 331
Target Start/End: Complemental strand, 34689747 - 34689538
Alignment:
Q  124 tacaacattttta----agagtgacaaaattgtatgtgattcataatcatattttcataaacattt-gaaaagattttgcataatgtaagagcctttaga 218  Q
    |||||||||||||    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||| |||| ||||||||||||||    
T  34689747 tacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcctttaga 34689648  T
Q  219 aataaatttacggtattgttatacaatggaccaaagaaaatgtagtat-tggtgtgagatatttgagtgtgcatgcatgcatcattagttcatttctcta 317  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||| |||||||| ||    |||||||||||||||||||||||||||    
T  34689647 aataaatttacggtattgttatacaatggactaaagaaaaggtagtatgaggtgtgaaatatttgattg----tgcatgcatcattagttcatttctcta 34689552  T
Q  318 taagaaacaaaagc 331  Q
    ||||||||||||||    
T  34689551 taagaaacaaaagc 34689538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 34689840 - 34689780
Alignment:
Q  19 caaatgagccagggtgcatgcatacatctacattcacagatgacactgcaacaattaagta 79  Q
    ||||||| ||||| ||||| ||| ||||||||||||||||||| ||| |||||||||||||    
T  34689840 caaatgatccaggatgcatacatccatctacattcacagatgatactccaacaattaagta 34689780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 50174850 - 50174901
Alignment:
Q  152 tatgtgattcataatcatattttcataaacatttgaaaagattttgcataat 203  Q
    |||| ||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  50174850 tatgagattcactatcatattttcataaagatttgaaaagattgtgcataat 50174901  T

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