View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_1 (Length: 790)
Name: NF5723_low_1
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 26 - 790
Target Start/End: Original strand, 33501670 - 33502432
Alignment:
| Q |
26 |
gccgataagaaaaacagaaaacaccacacaatgggaaaatcaggctaaacgtggggcgtcacatacttcttgcaatggaaagaatcacatctcaacgatg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33501670 |
gccgataagaaaaacagaaaacaccacacaatgggaaaatcaggttaaacgtgaggcgtcacatacttcttgcaatgggaagaatcacatctcaacgatg |
33501769 |
T |
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| Q |
126 |
aaaataatcggacgaggttagattttgtaggtcactatattttggctagcaggacaagttttgtctataaattaataacgcacctttacatttcattcaa |
225 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33501770 |
aaaataatcggacgaggttagattttataggtcactatattttggccagcagaacaagttttttctataaattaataacgcacctttacatttcattcaa |
33501869 |
T |
|
| Q |
226 |
caaacataatcagccaaatcatactatttttgcaaatttatccttcatctttatgttttacttttgtaattattagtttagtagctcacaaaaatctcaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33501870 |
caaacataatcagccaaatcatactatttttgcaaatttatccttcatctttatgttttacttttgtaattattagtgtagtagctcacaaaaatctcaa |
33501969 |
T |
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| Q |
326 |
gtccctacttaactttctcgaggagttaaaaaactcttagcccaaagacaaagttcttttctaagaataatagcttgaagcacaaaacaaagttcttttc |
425 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33501970 |
gtccgtacttaactttcttgaggagttaaaaaactcttagcccaaagacaaagttcttttctaagaataatagtttgaagcacaaaacaaagttcttttc |
33502069 |
T |
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| Q |
426 |
aataaatacttactcttcatggaatctttaaaatgtgtatnnnnnnnnncctttttagttcaatttcatttataaagattaaactatgggattttcatga |
525 |
Q |
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| T |
33502070 |
aataaatacttactattcatggaatctttaaaatgtgtat-aaaaaaaacctttttaattcaatttcatttataaagattaaactatgggattttcatga |
33502168 |
T |
|
| Q |
526 |
gaaattatgaattctaaatggtgttttttaactatggatactaactcattgctcatttgtttgtatattgtttttatgtgtttccaattgcattaagtca |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33502169 |
gaaattatgaattctaaatggtgttttttaactatggatactaactcattgctcatttgtttgtatattgtttttatgtgtttccaattgcattaagtca |
33502268 |
T |
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| Q |
626 |
tgaacaaacactatataagtcagcaatgaatatgaaaacaaaatatgagtggaccaaactgctataactggaatggagtttggagcctcttttgaatcaa |
725 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33502269 |
tgaacaaacactatataagtcagcaatgaatatgaaaacaaaatatgagtggaccaaactgctataactggaatggactttggagcctcttttgaatcaa |
33502368 |
T |
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| Q |
726 |
atatttgtcgctgttaataaagaataagaaaaaagtcaaataatctgactaagcaaactttacat |
790 |
Q |
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| T |
33502369 |
atatttgtcgctgttaataaagaataag-aaaaagtcaaataatctgactaagcaaactttacat |
33502432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 978395 - 978349
Alignment:
| Q |
297 |
attagtttagtagctcacaaaaatctcaagtccctacttaactttct |
343 |
Q |
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||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
978395 |
attagtttagtagctcacaaaaatctcaacttcgtacttaacattct |
978349 |
T |
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