View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_10 (Length: 347)
Name: NF5723_low_10
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 54702090 - 54701770
Alignment:
| Q |
20 |
ttgaccacaagattttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacaaagactctaatgagttaactgtgaaatcttcggc |
119 |
Q |
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| T |
54702090 |
ttgaccacaagattttctttgagaccacaagagtgttgaccacttgctctgctttaatcaaccacacagactctaatgagttaactgtgacatcttgggc |
54701991 |
T |
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| Q |
120 |
ttctttcaagatcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctttgcaa |
219 |
Q |
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| T |
54701990 |
ttctttcaagatcgaaaaagtttccatgtctttgtttgcggaagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctctgcaa |
54701891 |
T |
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| Q |
220 |
tagctttcttcatcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcctcctgagaataactgaccgta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54701890 |
tagctttcttcatcttcttcctatatgacaagtattttccttccaccctcaactgtgattccactttccacagctctcctcctgagaataactgacctta |
54701791 |
T |
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| Q |
320 |
gttcatgcatgatatcctttg |
340 |
Q |
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||||||||||||||||||||| |
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| T |
54701790 |
gttcatgcatgatatcctttg |
54701770 |
T |
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