View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5723_low_12 (Length: 314)

Name: NF5723_low_12
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5723_low_12
NF5723_low_12
[»] chr2 (1 HSPs)
chr2 (16-314)||(16700314-16700614)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 16700314 - 16700614
Alignment:
Q  16 caagagtaatcatgaatggtgaaaactcactgagtggagcaggagggttccagcacggttttagtgctttatcattttgcttcaatggctttttggttag 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16700314 caagagtaatcatgaatggtgaaaacttactgagtggagcaggagggttccagcacggttttagtgctttatcattttgcttcaatggctttttggtaag 16700413  T
Q  116 atgtgaaacggttgccatgttttcttgagtaactgttacagagtcttgttgggaaacttctgtagcttgaacttcaatcttgacatggtttagtgcaaac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16700414 atgtgaaacggttgccatgttttcttgagtaactgttacagagtcttgttgggaaacttctgtagcttgaacttcaatcttgacatggtttagtgcaaac 16700513  T
Q  216 aaaaattcttaagtaactttgttcaataatccacaagttttacataaccatcatattaatatcacataatccaacaaa--atattataaacaaactatta 313  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  16700514 aaaaattcttaagtaactttgttcaataatccaaaagttttacataaccatcatattaatatcacataatccaacaaaatatattataaacaaactatta 16700613  T
Q  314 a 314  Q
    |    
T  16700614 a 16700614  T

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