View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_14 (Length: 298)
Name: NF5723_low_14
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_14 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 27078108 - 27077825
Alignment:
| Q |
17 |
caggaaccgcggaacaaaaattaggtaactttatcgttgtggttgtttctttcattttctttgctagtaacaagattcaatccctcccgcatcaggtaca |
116 |
Q |
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| T |
27078108 |
caggaaccgcggaacaaaaattaggtaactttatcgttgtggttgtttctttcattttctttgctaggaacgagattcaatccc----gcatcaggtaca |
27078013 |
T |
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| Q |
117 |
tgtaaattgccaaaaatttattcacacagttctccgttagagcaagtaaac----caaaacatttttaaggaacaatgtgaaaatct--gttagtttatc |
210 |
Q |
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| T |
27078012 |
tgtaaattgccaaaaatttattcacacagttctcctttagagcaagtaaacaaaccaaaacatttttaggaaacgatgtgaaaatctctgttagtttatc |
27077913 |
T |
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| Q |
211 |
tgccttaatgctctattgaactatttcgttggtacagcctaagcttgttagacttgcattcacttcatcattaaacagtattgatttt |
298 |
Q |
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| T |
27077912 |
tgccttaatgctcttttgaactatttcgttggtacagcttaagcttgttagacttgcattcacttcatcattaaacagtattgatttt |
27077825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 26987189 - 26987426
Alignment:
| Q |
17 |
caggaaccgcggaacaaaaattaggtaactttatcgttgtggttgtttctttcattttctttgctagtaacaagattcaatccctcccgcatcaggtaca |
116 |
Q |
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| T |
26987189 |
caggaaccgcggaacaaaaattaggtaattttattgttgtagttgtttctttcattttctttgctaggaacaagattcaatcccac----atcaagtaca |
26987284 |
T |
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| Q |
117 |
tgtaaatt-gccaaaaatttattcacacagtt-ctccgttagagcaagtaaaccaaaacatttttaaggaacaatgtgaaaatctgttagtttatctgcc |
214 |
Q |
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| T |
26987285 |
tataactttgccaaaaatttattcacacagtttctccttaagagcaagtaaaccaaaacatttttaagaaac----------------agtttctctgcc |
26987368 |
T |
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| Q |
215 |
ttaatgctctattgaactatttcgttggtacagcc-taagcttgttagacttgcattc |
271 |
Q |
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| T |
26987369 |
ttaatgcttttttgcactatttcattggtacagccttaagcttgttagacttgcattc |
26987426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 27100430 - 27100176
Alignment:
| Q |
18 |
aggaaccgcggaacaaaaattaggtaacttt--atcgttgtggttgtttctttcattttctttgctagtaacaagattcaatccctcccgcatcaggtac |
115 |
Q |
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| T |
27100430 |
aggaaccgtggaacaaaaactaggta-ctttcgatcgttttagttgctt-tttcattttctttgctaggaacaaggtttaatcccgcca----catgtgc |
27100337 |
T |
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| Q |
116 |
atgtaaattgccaaaaatttattcaca--cagtt-ctccgttagagcaagtaaaccaaaacatttttaaggaacaatgtgaaaa--tctgttagtttatc |
210 |
Q |
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| T |
27100336 |
atgtaaattttcaaaattttattcatatacagtttctcctttagcgcaagcaaaccaaaacatttttaagaaattatgtgataatttctgttagtttatc |
27100237 |
T |
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| Q |
211 |
tgccttaatgctctattgaactatttcgttggtacagcctaagcttgttagacttgcattc |
271 |
Q |
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| T |
27100236 |
tgcctaaattctctttttaagtttttcatttctgcatcctatgcttgtttgacttgcattc |
27100176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 27026996 - 27027025
Alignment:
| Q |
269 |
ttcacttcatcattaaacagtattgatttt |
298 |
Q |
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| T |
27026996 |
ttcacttcatcattaaacagtattgatttt |
27027025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 30232256 - 30232514
Alignment:
| Q |
17 |
caggaaccgcggaacaaaaattaggtaactttatcgttgtggttgtttctttcattttctttgctagtaacaagattcaatccctcccgcatcaggtaca |
116 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |
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| T |
30232256 |
caggaaccgcggaacaaaaattaggtaattttattgttgtggttgtttctttcattttctttgctaggaacaagattcaatcccac----atcaggtaca |
30232351 |
T |
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| Q |
117 |
--tgtaaatt-gccaaaaatttattcacacagtt-ctccgttagagcaagtaaaccaaaacatttttaaggaacaatgtgaaaa--tctgttagtttatc |
210 |
Q |
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| T |
30232352 |
catgtaactttgccaaaaatttatttacacagtttctcctttagagcaagtaaaccaaaacatttttaagaaacgatgtgaaaacctctgttagtttatc |
30232451 |
T |
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| Q |
211 |
tgccttaa--tgctctattgaactatttcgttggtacagcctaagcttgttagacttgcattc |
271 |
Q |
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| T |
30232452 |
agccttgaattgctcttttgaactatttcattggtacagcctaagcttgttagacttgcattc |
30232514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 30229537 - 30229780
Alignment:
| Q |
13 |
tcatcaggaaccgcggaacaaaaattaggtaactttatcgttgtggttgtttctttcattttctttgctagtaacaagattcaatccctcccgcatcagg |
112 |
Q |
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| T |
30229537 |
tcatcaggaaccgcggaacaaaaattaggtaattttatcgttgtggttgtttctttcattttcttttctaggaaaaagattcaatctc-----------g |
30229625 |
T |
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| Q |
113 |
tacatgtaaattgccaaaaatttattcacacag-ttctccgttagagcaagtaaaccaaaacatttttaaggaacaatgtgaaaa--tctgttagtt-ta |
208 |
Q |
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| T |
30229626 |
tacatgtaaattgccaaaagtttattcacacagtttctcctttagagcaagtaaactaaaccatttttaagaaataatgtgataatctctgttagttcaa |
30229725 |
T |
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| Q |
209 |
tctgccttaatgctctattgaactatttcgttggtacagcctaagcttgttagacttgcattc |
271 |
Q |
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| T |
30229726 |
tct---ttca-----ttttgaactatttcattggtacaacctaagcttgttagacttgcattc |
30229780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 34689296 - 34689533
Alignment:
| Q |
17 |
caggaaccgcggaacaaaaattaggtaactttatcgttgtggttgtttctttcattttctttgctagtaacaagattcaatccctcccgcatcaggtaca |
116 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||| | |||| ||||| ||||| |
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| T |
34689296 |
caggaaccgcggaacaaaaattaggtaattttattgttgttgttgtttctttcattttctttgctaggaacaagattcga----tcccacatcaagtaca |
34689391 |
T |
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| Q |
117 |
tgtaa-attgccaaaaatttattcacacag-ttctccgttagagcaagtaaaccaaaacatttttaaggaacaatgtgaaaatctgttagtttatctgcc |
214 |
Q |
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| ||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
34689392 |
tctaactttgccaaaaatttattcacacagtttctccttaagagcaagtaaaccaaaacatttttaagaaac----------------agtttctctgcc |
34689475 |
T |
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| Q |
215 |
ttaatgctctattgaactatttcgttggtacagcc-taagcttgttagacttgcattc |
271 |
Q |
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| T |
34689476 |
ttaatgcttttttgcactatttcattggtacagccttaagcttgttagacttgcattc |
34689533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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