View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5723_low_15 (Length: 293)

Name: NF5723_low_15
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5723_low_15
NF5723_low_15
[»] chr3 (1 HSPs)
chr3 (1-293)||(54701459-54701747)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 54701459 - 54701747
Alignment:
Q  1 tactatgacgctaacttgtattctcatttcttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaaccccaaaagctctctgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54701459 tactatgacgctaacttgtattctcatttcttagttatctttattttcagagaaaaacaatggcaggtgatgtagaaacgaaccccaaaagctctctgca 54701558  T
Q  101 tagtcgcagcaacgactagcttaccctcggcatcacaccctaccgtatcacatcatcaataagtcacacactcgatgacttgcaggatttgtataggcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54701559 tagtcgcagcaacgactagcttaccctcggcatcacaccctaccgtatcacatcatcaataagtcacacactcgataacttgcaggatttgtataggcac 54701658  T
Q  201 atatatataagctactccacatgacaatttcccaaccagcattggcacgataaggcagcgagacaccagttgatgaactatttgatggatcta 293  Q
        |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  54701659 ----atataagctactccacatgacaatttcccaacaagcattggcacgataaggcagcgagaaacaagttgatgaactatttgatggatcta 54701747  T

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