View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_2 (Length: 609)
Name: NF5723_low_2
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 595
Target Start/End: Original strand, 8178354 - 8178943
Alignment:
| Q |
16 |
gaaagtgctttaataaaacggccttgagagtatcgtatacacataccaacaccgaagcatttctgatcactaaacagtgctgcgtcgacattgcacttga |
115 |
Q |
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| T |
8178354 |
gaaagtgctttaataaaacggccttgagagtttcgtatacacataccaacaccgaagcatttctgatcactaaacagtgctgcgtcgacattgcacttga |
8178453 |
T |
|
| Q |
116 |
catatccttgatccggtggctgccagctgatgttttg------------ctgctgttcactgnnnnnnnggcgtttacgagcattctgccactgaaaaat |
203 |
Q |
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| T |
8178454 |
catatccttgatccggtggctgccagctgatgttttgttgctgttcctgctgctgttcactgtttttttggcatttacgagcattctgccactgaaaaat |
8178553 |
T |
|
| Q |
204 |
accttctcgtgctagctgtacagccatacgaacattatgtaccacaccttcccacactttatcactacggcggcgccaaatgcaccataacaccgctgct |
303 |
Q |
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|||||| || |||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
8178554 |
accttcgcgcgctagctgtacagccatacgaacattctgtacctcgccttcccacactttatcattacggcggcgccatatgcaccataacaccgctgct |
8178653 |
T |
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| Q |
304 |
atgtccctacacaaatgattttgcagcctgcaaaaaacagtaaataaatgtgcagctagtcccgtggcagcatcgatacctgctgctattacatcccata |
403 |
Q |
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| T |
8178654 |
atgtccctgcacaaatgattttgcagcctgcaaaaaacagtaaataaatgtgcagccagtcccgtggcggcatcgatacctgctgctattacatcccata |
8178753 |
T |
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| Q |
404 |
gcccagcttcaatccatagttgtttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggtctcacaatgggggcagcaatccgaaca |
503 |
Q |
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| T |
8178754 |
gcccagcttcaatccatacttgtttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggtctcacaatgggggcagcaatccgaaca |
8178853 |
T |
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| Q |
504 |
agggannnnnnntatcttgaagtctcattcgcgtaggaagaacacccctaagcaccctccataagaaaactttgatcctttgaggtatatga |
595 |
Q |
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| T |
8178854 |
aggga--ccccctatcttgaagtctcattcgcgtaggaagaacacccctaagcaccctccataagaaaactttgatcctttgaggtatatga |
8178943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 298 - 591
Target Start/End: Original strand, 37604260 - 37604554
Alignment:
| Q |
298 |
gctgctatgtccctacacaaatgattttgcagcctgcaaaaaacagtaaataaatgtgcagctagtcccgtggcagcatcgatacctgctgctattacat |
397 |
Q |
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| T |
37604260 |
gctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctgttatcgtat |
37604359 |
T |
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| Q |
398 |
cccatagcccagcttcaatccatagttgtttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggtctcacaatgggggcagcaatc |
497 |
Q |
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| T |
37604360 |
cccataacctagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagaaggggcagtagtc |
37604459 |
T |
|
| Q |
498 |
cgaacaagggannnnnnntatcttgaagtct--cattcgcgtaggaagaacacccctaagcaccctccataagaaaactttgatcctttgaggtat |
591 |
Q |
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| T |
37604460 |
cgaagaagggacccccctt-ccttgaagtcttatatatgcgaagggagaacacccctcaacaacctccataaaaaaactttgatccgttgaggtat |
37604554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 37604062 - 37604179
Alignment:
| Q |
40 |
tgagagtatcgtatacacataccaacaccgaagcatttctgatcactaaacagtgctgcgtcgacattgcacttgacatatccttgatccggtggctgcc |
139 |
Q |
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| T |
37604062 |
tgagagttccgtatacacaatccaataccgaagcatttctgatcaccaagtagcgctatgtcgacgttacatttgacaaatccttcctccggtggcagcc |
37604161 |
T |
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| Q |
140 |
agctgatgttttgctgct |
157 |
Q |
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| T |
37604162 |
acctgatattatgctgct |
37604179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 49915161 - 49915113
Alignment:
| Q |
437 |
cacatccgatgaaaacgtgccaatcattctcataattggtctcacaatg |
485 |
Q |
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| T |
49915161 |
cacatcctataaacacatgccaatcattctcataatttgtctcacaatg |
49915113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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