View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_26 (Length: 239)
Name: NF5723_low_26
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47318652 - 47318874
Alignment:
| Q |
1 |
atacatacaaaccggaatattgatccgattaaatgtccacctccaagataaatataagttattatgttttgggtcatacttagacacttattaaggaacg |
100 |
Q |
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| T |
47318652 |
atacatacaaaccggaatattgatccgattaaatgtccacctccaagataaatataagttattatgttttgggtcatacttagacacttattaaggaacg |
47318751 |
T |
|
| Q |
101 |
cccgtttgcgtttctgtttagtttccactttgtcacgtagcactacattttgctaactaggtgaaaagaaaaatttgattaatagcaacacaacactaac |
200 |
Q |
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| T |
47318752 |
cccgtttgcgtttctgtttagtttccactttgtcacgtagcactacattttgttaactaggtgaaaagaaaaatttgattaatagcaacacaacactaac |
47318851 |
T |
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| Q |
201 |
gactattttacatacgtagtggt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
47318852 |
gactattttacatacgtagtggt |
47318874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41451020 - 41450970
Alignment:
| Q |
1 |
atacatacaaaccggaatattgatccgattaaatgtccacctccaagataa |
51 |
Q |
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| T |
41451020 |
atacatacaaactggaatattgatccgattaaatgtccacctccaagataa |
41450970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16651380 - 16651330
Alignment:
| Q |
1 |
atacatacaaaccggaatattgatccgattaaatgtccacctccaagataa |
51 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
16651380 |
atacatacaaaccaaaatattgatccgattaaatgtccatctccaagataa |
16651330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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