View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_28 (Length: 238)
Name: NF5723_low_28
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6490554 - 6490333
Alignment:
| Q |
1 |
aaattccaagacactaaactagctccagagtccagaaaaataatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490554 |
aaattccaagacactaaactagctccagagtccagaaaaataatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttac |
6490455 |
T |
|
| Q |
101 |
ttaaatcatagaaaacccatctaccttttgtctctaatgattcagcatgaatgacattgtgatcatatataaagaaaatgtgccaaatggtgtatggtaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490454 |
ttaaatcatagaaaacccatctaccttttgtctctaatgattcagcatgaatgacattgtgatcatatataaagaaaatgtgccaaatggtgtatggtaa |
6490355 |
T |
|
| Q |
201 |
ttagtaaagaagacatactgaa |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
6490354 |
ttagtatagaagacatactgaa |
6490333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 38700128 - 38700348
Alignment:
| Q |
2 |
aattccaagacactaaactagctccagagtccagaaaaataatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttact |
101 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| | ||||||| |||||||||||| |
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| T |
38700128 |
aattccaagacactaaactagctccagagtccagaaaaataatcaccataaagccacaacagtttggttctctaaataaccttcaccacagatccttact |
38700227 |
T |
|
| Q |
102 |
taaatcatagaaaacccatctaccttttgtctctaatgattcagcatgaatgacattgtgatcatatataaagaaaatgtgccaaatggtgtatggtaat |
201 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
38700228 |
taaatcatagaaaacccatctaccttttgtttctaatgattcagcatgaataacattgtgatcatatataaagaaaatgtgccaaatggtatatagtaac |
38700327 |
T |
|
| Q |
202 |
tagtaaagaagacatactgaa |
222 |
Q |
| |
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|||| |||||||||||||||| |
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|
| T |
38700328 |
tagtgaagaagacatactgaa |
38700348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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