View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_3 (Length: 443)
Name: NF5723_low_3
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_3 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: scaffold0130 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 21938 - 21780
Alignment:
| Q |
17 |
aagttggaaaaataagttaaataaacatatactctctcaacaaaa-tctagaagcattaaaataataaagaatgaaactaaggcaaaatattggaaaact |
115 |
Q |
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| T |
21938 |
aagttggaaaaataagttcaataaacatatactctctcaacaaaaatctagaagcattaaaataataaagaaggaaactaaggcaaaatattggaaaact |
21839 |
T |
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| Q |
116 |
gaaattttggagacatgtcaaagcattaaaataataaagaaggttacaacatttctaac |
174 |
Q |
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| T |
21838 |
caaattttggagacatgtcaaagcattaaaataataaagaaggttaaaacatttctaac |
21780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 265 - 425
Target Start/End: Complemental strand, 38908576 - 38908420
Alignment:
| Q |
265 |
atattgatgatctcactattataattcacttgtatacctttttaatttatggaccaatgaattttaagaatgagattaccaacataacaccctaatgcca |
364 |
Q |
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| T |
38908576 |
atattgatgatctcactattataattcacttgtatacctttttaatttgtggaccaatgaattttaagaatgagattaccaacataac-----aatgcaa |
38908482 |
T |
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| Q |
365 |
cataagagaatacagattggatctttactcttaatacataaagagca-ccccaaattgggaa |
425 |
Q |
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| T |
38908481 |
catcagagaatacagattggatctttactctttgtacataaagagcacccccaaattgggaa |
38908420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 38908638 - 38908598
Alignment:
| Q |
160 |
tacaacatttctaacaatctgtgatatctgattcagaaaac |
200 |
Q |
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| T |
38908638 |
tacaacatttctaacaatctttgatatctgattcagaaaac |
38908598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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