View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5723_low_34 (Length: 204)

Name: NF5723_low_34
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5723_low_34
NF5723_low_34
[»] chr8 (2 HSPs)
chr8 (1-178)||(44765129-44765306)
chr8 (1-178)||(44761823-44761999)
[»] chr1 (3 HSPs)
chr1 (4-177)||(23405596-23405769)
chr1 (98-178)||(13087573-13087653)
chr1 (25-94)||(16544323-16544392)
[»] chr7 (6 HSPs)
chr7 (1-177)||(11205731-11205911)
chr7 (1-94)||(30452641-30452733)
chr7 (1-94)||(30456246-30456338)
chr7 (26-93)||(4257494-4257561)
chr7 (97-178)||(42513265-42513346)
chr7 (26-92)||(6102843-6102909)
[»] chr4 (6 HSPs)
chr4 (1-178)||(36050519-36050696)
chr4 (1-178)||(36053778-36053955)
chr4 (10-178)||(55322470-55322638)
chr4 (26-94)||(12637951-12638019)
chr4 (26-90)||(24733552-24733616)
chr4 (101-177)||(45735883-45735959)
[»] chr5 (4 HSPs)
chr5 (43-178)||(41709389-41709524)
chr5 (26-178)||(19797245-19797397)
chr5 (1-76)||(24108654-24108730)
chr5 (97-178)||(8123394-8123475)
[»] chr2 (4 HSPs)
chr2 (1-171)||(45327522-45327685)
chr2 (15-117)||(28149295-28149397)
chr2 (4-93)||(40401019-40401108)
chr2 (60-94)||(28860693-28860727)
[»] chr3 (4 HSPs)
chr3 (1-179)||(14029172-14029350)
chr3 (97-180)||(36326366-36326449)
chr3 (97-178)||(30911921-30912002)
chr3 (60-116)||(33328132-33328188)
[»] chr6 (3 HSPs)
chr6 (97-172)||(4834589-4834664)
chr6 (99-166)||(7426464-7426531)
chr6 (97-150)||(7415533-7415586)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 44765306 - 44765129
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttct 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  44765306 tatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatatgcctaaaagatcctttct 44765207  T
Q  101 agattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44765206 agattaagatgagtcatactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 44765129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 44761999 - 44761823
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttct 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||    
T  44761999 tatatagacttgtgcatacacatagtaagctaactacaacggctacacaatagcattgcttagtaactaactaatagaatatgtctaaaa-atcctttct 44761901  T
Q  101 agattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44761900 agattaagatgagtcaaactaccttctagaactaggggagtcaccacatttatattccttattctagatatcctatca 44761823  T

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Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 23405596 - 23405769
Alignment:
Q  4 atagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttctaga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  23405596 atagacttgtgcatacacatagtaagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaagatcctttctaga 23405695  T
Q  104 ttaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatc 177  Q
    |||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||    
T  23405696 ttaagatgagtcatactaccttctagaactaggggagtcatcatatttatattccttattctagatatcctatc 23405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 13087653 - 13087573
Alignment:
Q  98 tctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    ||||||||||| ||||||||| || ||||||||||||   ||||||||||||| ||  ||||||||||  |||||||||||    
T  13087653 tctagattaaggtgagtcataataacttctagaactagccgagtcaccacattaatgctccttattctgaatatcctatca 13087573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 16544392 - 16544323
Alignment:
Q  25 gtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatc 94  Q
    ||||||||||||||| ||| ||| ||||||  |  |||||||||||||| |||| |||||||||||||||    
T  16544392 gtaagataactacaatggccacataatagcgcttcttagtaactaactagtagagtatgcctaaaagatc 16544323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 11205911 - 11205731
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaa----ctaactaatagaatatgcctaaaagatcat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||||||||||||| |    
T  11205911 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgcttagtaattaactaactaatagaatatgcctaaaagatcct 11205812  T
Q  97 ttctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatc 177  Q
    |||||||||||||||||||||||||  ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||    
T  11205811 ttctagattaagatgagtcatactactttctagaactaggagagtcaccacatttatattccatattctagatatcctatc 11205731  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30452733 - 30452641
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatc 94  Q
    ||||||||||| ||||||| |||| |||||||||||||||  ||||||||||||| || | | ||||||||||||||||||||| |||||||||    
T  30452733 tatatagactt-tgcatactcataataagataactacaacaactacacaatagcactgctcaataactaactaatagaatatgcttaaaagatc 30452641  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30456338 - 30456246
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatc 94  Q
    ||||||||||| ||||||| |||| |||||||||||||||  ||||||||||||| || | | |||| |||||||||||||||| |||||||||    
T  30456338 tatatagactt-tgcatactcataataagataactacaacaactacacaatagcactgctcaataacaaactaatagaatatgcttaaaagatc 30456246  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 4257494 - 4257561
Alignment:
Q  26 taagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagat 93  Q
    ||||||||||||||| |||||||||||||  |  ||||||||||||||||||||||||  ||||||||    
T  4257494 taagataactacaacagctacacaatagcgcttcttagtaactaactaatagaatatgtttaaaagat 4257561  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 42513265 - 42513346
Alignment:
Q  97 ttctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    |||||||||||| ||||||||| || ||||||||||||   |||||||||||||  |  ||||||||||| |||||||||||    
T  42513265 ttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatca 42513346  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 6102909 - 6102843
Alignment:
Q  26 taagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaaga 92  Q
    ||||||||||| || ||||||| ||||||  |  |||||||||| ||||||||||||||||||||||    
T  6102909 taagataactaaaatggctacataatagcgcttcttagtaactacctaatagaatatgcctaaaaga 6102843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 36050696 - 36050519
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttct 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36050696 tatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatatgcctaaaagatcctttct 36050597  T
Q  101 agattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||  || || |||||||| |||||||||||    
T  36050596 agattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatca 36050519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 36053955 - 36053778
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttct 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36053955 tatatagacttgtgcatacacatagtaagctaactacaacggctacgcaatagcattgcttagtaactaactaatagaatatgcctaaaagatcctttct 36053856  T
Q  101 agattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||  || || |||||||| |||||||||||    
T  36053855 agattaagatgagtcatactaccttctagaactaggggagtcaccacattagtactcattattctaaatatcctatca 36053778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 55322470 - 55322638
Alignment:
Q  10 ttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttctagattaaga 109  Q
    |||||||||| | || ||||||||||||||   ||||||||||||| || ||| |||||||||||||||||||||||||||||||   ||||||||||||    
T  55322470 ttgtgcatacccgtaataagataactacaataactacacaatagcactgcttaataactaactaatagaatatgcctaaaagatcccatctagattaaga 55322569  T
Q  110 tgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    |||||||||||| ||||||||||||     | |||| ||||||||||| ||||||||||||||||||||    
T  55322570 tgagtcatactaccttctagaactagctcggccacctcatttatattcattattctagatatcctatca 55322638  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 12638019 - 12637951
Alignment:
Q  26 taagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatc 94  Q
    |||||||||||||||||||||||||||||  |  ||||| ||||||||||||||||||| |||||||||    
T  12638019 taagataactacaacggctacacaatagcgcttcttagtcactaactaatagaatatgcttaaaagatc 12637951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 24733616 - 24733552
Alignment:
Q  26 taagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaa 90  Q
    |||||||||||||| ||||||| ||||||  |  |||||||||||||||||||||| ||||||||    
T  24733616 taagataactacaatggctacataatagcgcttcttagtaactaactaatagaataggcctaaaa 24733552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 45735959 - 45735883
Alignment:
Q  101 agattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatc 177  Q
    |||||||||||| |||||||| |||||||| ||||  ||||| | ||||||||| ||||||||| | ||||||||||    
T  45735959 agattaagatgattcatactagcttctagatctaaatgagtcgcgacatttatactccttattcaaaatatcctatc 45735883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 41709524 - 41709389
Alignment:
Q  43 ctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttctagattaagatgagtcatactatcttctagaactaagggagtc 142  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||||||    
T  41709524 ctacgcaatagcattgcttagtaactaactaatagaatatgcctaaaagatcctttctagattaagatgagtcatactaccttctagaactagaggagtc 41709425  T
Q  143 accacatttatattccttattctagatatcctatca 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  41709424 accacatttatattccttattctagatatcctatca 41709389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 19797397 - 19797245
Alignment:
Q  26 taagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttctagattaagatgagtcatactatctt 125  Q
    ||||||||||||||  | ||||||||| ||||| |||||||||||| |||| ||||||||||||||||   || || ||||||| || |||| ||| |||    
T  19797397 taagataactacaatagttacacaataacattgcttagtaactaaccaatataatatgcctaaaagattccttttaaattaagaggaatcattctacctt 19797298  T
Q  126 ctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    | |||||||   |||||| |||||||||| |  |||||||| |||||||||||    
T  19797297 ccagaactagatgagtcatcacatttatacttgttattctaaatatcctatca 19797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24108730 - 24108654
Alignment:
Q  1 tatatagacttgt-gcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaata 76  Q
    ||||||||||||| |||||| |||| ||| |||||||||||  ||||||||||||| || | | |||||||||||||    
T  24108730 tatatagacttgttgcatactcataataaaataactacaacaactacacaatagcactgctcaataactaactaata 24108654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 8123475 - 8123394
Alignment:
Q  97 ttctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    |||||||||||| | ||||||| || ||||||||||||   ||||||||| |||  |  ||||||||||| |||||||||||    
T  8123475 ttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatca 8123394  T

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Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 45327522 - 45327685
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||    
T  45327522 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagtattgcttagtaactaactaatagaatatgcctaaaagatcctttct 45327621  T
Q  101 agattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatat 171  Q
     ||||||||| |||||| ||| ||| |||||||| ||||||||       |||||||||||||||||||||    
T  45327622 ggattaagataagtcattctaccttttagaactaggggagtca-------tatattccttattctagatat 45327685  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 28149397 - 28149295
Alignment:
Q  15 catacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttctagattaagatgagt 114  Q
    ||||||||||| ||||||||||||||||||||| ||||  | |  ||| ||||||||||||| ||||||| |||||||||  ||||||||||||||||||    
T  28149397 catacacatagaaagataactacaacggctacataataatactacttaataactaactaataaaatatgcataaaagatctcttctagattaagatgagt 28149298  T
Q  115 cat 117  Q
    |||    
T  28149297 cat 28149295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 40401019 - 40401108
Alignment:
Q  4 atagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagat 93  Q
    |||||||||||||||| |||  |||||||||||||||| ||| | ||||||| || ||| ||||||||||| ||||||||| ||||||||    
T  40401019 atagacttgtgcatactcatgataagataactacaacgactatataatagcagtgcttaataactaactaagagaatatgcttaaaagat 40401108  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 28860727 - 28860693
Alignment:
Q  60 ttagtaactaactaatagaatatgcctaaaagatc 94  Q
    ||||||||||||||||| |||||||||||||||||    
T  28860727 ttagtaactaactaatataatatgcctaaaagatc 28860693  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 14029350 - 14029172
Alignment:
Q  1 tatatagacttgtgcatacacatagtaagataactacaacggctacacaatagcattgtttagtaactaactaatagaatatgcctaaaagatcatttct 100  Q
    ||||||| ||||||||||| |||  ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||   ||||    
T  14029350 tatataggcttgtgcatactcattataagataactacaacggctacacaataacactgcttagtaactaactaatagaatatgcttaaaagattccttct 14029251  T
Q  101 agattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatcaa 179  Q
    |||||||||||| |||| ||| ||||||||||||   |||||||| ||||| |  | ||||||||| ||||| ||||||    
T  14029250 agattaagatgattcattctaccttctagaactagccgagtcaccgcatttgtgcttcttattctaaatatcttatcaa 14029172  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 36326449 - 36326366
Alignment:
Q  97 ttctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatcaat 180  Q
    |||||||||||  ||||||||| || ||||||||||||   ||||||||||||| ||| || |||||||| |||| ||||||||    
T  36326449 ttctagattaatgtgagtcataataacttctagaactagatgagtcaccacattaatactcattattctaaatatgctatcaat 36326366  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 30912002 - 30911921
Alignment:
Q  97 ttctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatcctatca 178  Q
    |||||||||||| ||||||||| || |||||||||||||  |||||| ||||||  || || ||||||||  ||||||||||    
T  30912002 ttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattattctaagtatcctatca 30911921  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 33328188 - 33328132
Alignment:
Q  60 ttagtaactaactaatagaatatgcctaaaagatcatttctagattaagatgagtca 116  Q
    |||||||||||| |||||||||| ||| | |||||  ||||||| ||||||||||||    
T  33328188 ttagtaactaaccaatagaatatacctgatagatcccttctagaataagatgagtca 33328132  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 4834664 - 4834589
Alignment:
Q  97 ttctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattctagatatc 172  Q
    |||||||||||| ||||||||| || ||||||||||| |  |||||||||||||  || || |||||||| |||||    
T  4834664 ttctagattaaggtgagtcataataacttctagaacttactgagtcaccacattcgtagtcattattctaaatatc 4834589  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 7426531 - 7426464
Alignment:
Q  99 ctagattaagatgagtcatactatcttctagaactaagggagtcaccacatttatattccttattcta 166  Q
    |||||||||||||||| ||| ||| |||||||||||   ||||||||||||| ||| || ||||||||    
T  7426531 ctagattaagatgagttataatattttctagaactagctgagtcaccacattaatactcattattcta 7426464  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 7415586 - 7415533
Alignment:
Q  97 ttctagattaagatgagtcatactatcttctagaactaagggagtcaccacatt 150  Q
    ||||| |||||||||||||||| ||| |||||||||||   |||||||||||||    
T  7415586 ttctaaattaagatgagtcataatattttctagaactagctgagtcaccacatt 7415533  T

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