View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5723_low_4 (Length: 417)

Name: NF5723_low_4
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5723_low_4
NF5723_low_4
[»] chr6 (12 HSPs)
chr6 (194-400)||(9873931-9874136)
chr6 (268-400)||(9866322-9866454)
chr6 (18-160)||(9874133-9874275)
chr6 (192-256)||(9872949-9873013)
chr6 (29-128)||(9886106-9886201)
chr6 (192-256)||(9885868-9885932)
chr6 (268-319)||(9874303-9874354)
chr6 (48-126)||(9873080-9873158)
chr6 (195-234)||(9950001-9950040)
chr6 (209-256)||(9973756-9973803)
chr6 (63-128)||(9872468-9872533)
chr6 (209-253)||(9952294-9952338)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 194 - 400
Target Start/End: Complemental strand, 9874136 - 9873931
Alignment:
Q  194 gaaaggagaatgctaggctgaaagaaaaggttagtaaacttcttacgttgatgatattttaatcagttcatattttttgcaattgtaaacatataatgaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9874136 gaaaggagaatgctaggctgaaagaaaaggttagtaaacttcttacgttgatgatattttaatcagttcatattttttgcaattgtaaacatataatgaa 9874037  T
Q  294 tacaattgtatatgaataactttgaaaatgagtttgaaatctcctctctcacttgtaattatatatatcatttttgaaatgtatgttcaggagtttggct 393  Q
    || ||||||  ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  9874036 ta-aattgttgatgaataactttgaaaatgagtttgaaaaatcctctctcacttgtaagtatatatatcatttttgaaatgcatgttcaggagtttggct 9873938  T
Q  394 ccgaatg 400  Q
    |||||||    
T  9873937 ccgaatg 9873931  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 268 - 400
Target Start/End: Original strand, 9866322 - 9866454
Alignment:
Q  268 ttttgcaattgtaaacatataatgaatacaattgtatatgaataactttgaaaatgagtttgaaatctcctctctcacttgtaattatatatatcatttt 367  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  9866322 ttttgcaattgtaaacatataatcaatacaattgtagatgaataactttgaaaatgagtttcaaatctcctctctcacttgtaagtatatatatcatttt 9866421  T
Q  368 tgaaatgtatgttcaggagtttggctccgaatg 400  Q
    || ||||||||||||||||||||||||||||||    
T  9866422 tggaatgtatgttcaggagtttggctccgaatg 9866454  T

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Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 9874275 - 9874133
Alignment:
Q  18 ataccggtatttataaacttcaaataattccagattcaattacacatacaatcacttatacacagatgcatttatatatacaaattatttatgtatttgt 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  9874275 ataccggtatttataaacttaaaataattccagattcaattacacctacaatcacttatacacacatgcatttacatatacaaattatttatgtatttgt 9874176  T
Q  118 taaattattatatgagaggtactgaagatcacactttgtgaaa 160  Q
    || |||||| ||||| ||||||||||||| |||||||||||||    
T  9874175 tatattattttatgataggtactgaagattacactttgtgaaa 9874133  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 9873013 - 9872949
Alignment:
Q  192 gagaaaggagaatgctaggctgaaagaaaaggttagtaaacttcttacgttgatgatattttaat 256  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  9873013 gagaaaggagaattctaggctgaaagaaaaggttagtaaacttctttcgctgatgataatttaat 9872949  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 9886201 - 9886106
Alignment:
Q  29 tataaacttcaaataattccagattcaattacacatacaatcacttatacacagatgcatttatatatacaaattatttatgtatttgttaaattattat 128  Q
    |||| |||| ||||||||||||||||| ||||||||||| |||| |||||||| || |||||| ||||    ||||||||||||||||||  ||||||||    
T  9886201 tatagacttaaaataattccagattcacttacacatacattcacgtatacacacatacatttaaatat----attatttatgtatttgttccattattat 9886106  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 9885932 - 9885868
Alignment:
Q  192 gagaaaggagaatgctaggctgaaagaaaaggttagtaaacttcttacgttgatgatattttaat 256  Q
    |||||||| ||||| |||||||||||||||||||| |||  ||||| ||||||||||||||||||    
T  9885932 gagaaaggggaatgttaggctgaaagaaaaggttactaagtttctttcgttgatgatattttaat 9885868  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 9874354 - 9874303
Alignment:
Q  268 ttttgcaattgtaaacatataatgaatacaattgtatatgaataactttgaa 319  Q
    ||||||||||||||||||||||| |||||||||||| |||||| ||||||||    
T  9874354 ttttgcaattgtaaacatataatcaatacaattgtagatgaatgactttgaa 9874303  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 9873158 - 9873080
Alignment:
Q  48 cagattcaattacacatacaatcacttatacacagatgcatttatatatacaaattatttatgtatttgttaaattatt 126  Q
    |||||||| ||||||||||| |||||| |||||| || |||||| ||||||  ||||||||||||||||| | ||||||    
T  9873158 cagattcacttacacatacattcacttttacacacatacatttacatatacggattatttatgtatttgtaacattatt 9873080  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 9950001 - 9950040
Alignment:
Q  195 aaaggagaatgctaggctgaaagaaaaggttagtaaactt 234  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  9950001 aaaggagaatgctaggatgaaagaaaaggttagttaactt 9950040  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 9973756 - 9973803
Alignment:
Q  209 ggctgaaagaaaaggttagtaaacttcttacgttgatgatattttaat 256  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||    
T  9973756 ggctgaaagaaaaggttagtaaatttctttcattgattatattttaat 9973803  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 9872468 - 9872533
Alignment:
Q  63 atacaatcacttatacacagatgcatttatatatacaaattatttatgtatttgttaaattattat 128  Q
    ||||| ||||||||| ||| || |||| || ||||| |||||||||||||||||| | ||||||||    
T  9872468 atacattcacttataaacatatacattaatttatactaattatttatgtatttgtcacattattat 9872533  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 9952338 - 9952294
Alignment:
Q  209 ggctgaaagaaaaggttagtaaacttcttacgttgatgatatttt 253  Q
    ||||||||||||||||||||||| ||||| | ||||| |||||||    
T  9952338 ggctgaaagaaaaggttagtaaatttctttcattgattatatttt 9952294  T

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