View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5723_low_5 (Length: 405)
Name: NF5723_low_5
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_5 |
 | |
|
| [»] scaffold0119 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0119 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 100 - 389
Target Start/End: Original strand, 26741 - 27030
Alignment:
| Q |
100 |
acccactaaaaatgcctatctactatgaattcttaaacctgtnnnnnnntgagttcgattttcaagcagagttagtgtaaaagtttcacaccgtcaaccc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26741 |
acccactaaaaatgcctatctactatgaattcttaaacctgtaaaaaaatgagttcgattttcaagcagagttagtgtaaaagtttcacaccgtcaaccc |
26840 |
T |
|
| Q |
200 |
atcagaatcaatcaaaagaaacatttctaattatttgacagttatgatttattaacagtgttaaaatcctttacagcgatagtgtatatgaattaaaccc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
26841 |
atcagaatcaatcaaaagaaacatttctaattatttgacagttatgatttattaacagtgttaaaatcctttacaccgatagtgtatatgaattaaactc |
26940 |
T |
|
| Q |
300 |
ttttctatttactgatagcttaaatttagaaaaaagatcatctttaaacatctagcttataattctactactcttcaaaataataataat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26941 |
ttttctatttactgatagcttaaatttagaaaaaagatcatctttaaacatctagcttataattctactactcttcaaaataataataat |
27030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 100 - 389
Target Start/End: Complemental strand, 1274350 - 1274061
Alignment:
| Q |
100 |
acccactaaaaatgcctatctactatgaattcttaaacctgtnnnnnnntgagttcgattttcaagcagagttagtgtaaaagtttcacaccgtcaaccc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1274350 |
acccactaaaaatgcctatctactatgaattcttaaacctgtaaaaaaatgagttcgattttcaagcagagttagtgtaaaagtttcacaccgtcaaccc |
1274251 |
T |
|
| Q |
200 |
atcagaatcaatcaaaagaaacatttctaattatttgacagttatgatttattaacagtgttaaaatcctttacagcgatagtgtatatgaattaaaccc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
1274250 |
atcagaatcaatcaaaagaaacatttctaattatttgacagttatgatttattaacagtgttaaaatcctttacaccgatagtgtatatgaattaaactc |
1274151 |
T |
|
| Q |
300 |
ttttctatttactgatagcttaaatttagaaaaaagatcatctttaaacatctagcttataattctactactcttcaaaataataataat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1274150 |
ttttctatttactgatagcttaaatttagaaaaaagatcatctttaaacatctagcttataattctactactcttcaaaataataataat |
1274061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University