View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5723_low_9 (Length: 375)
Name: NF5723_low_9
Description: NF5723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5723_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 21 - 365
Target Start/End: Complemental strand, 33656736 - 33656392
Alignment:
| Q |
21 |
taggtcacaatattatctgtgaatgaaaaacaatactatgtgattaacaggaaatgtgtcatatgccgaggggcgtgtcaaaaggtcaactatttcctcc |
120 |
Q |
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| T |
33656736 |
taggtcacaatattatctgtgaatgaaaaacaatactatgtgattaacaggaaatgtgtcatatgccgaggggcgtgtcaaaaggtcaactatttcctcc |
33656637 |
T |
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| Q |
121 |
aatcaagatggaaatgaagagaactcaaggtatatgccaacatctttgtactcttcaggaagtatctacaatataatctgataattttttatctatgttt |
220 |
Q |
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| T |
33656636 |
aatcaagatggaaatgaagagaactcaaggtatatgccaacatctttgtactcttcaggaagtatctacaatataatctgataattttttatctatgttt |
33656537 |
T |
|
| Q |
221 |
tattgtagggttcgccttcaacgtgttttagacaatcgtaaagctatgctttgcaaagaacaagcaatggcctacgcccgtgctttagttgctggatttt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33656536 |
tattgtagggttcgccttcaacgtgttttagacaatcgtaaagctatgctttgcaaagaacaagcaatggcctacgcccgtgctttagttgctggatttt |
33656437 |
T |
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| Q |
321 |
atccagaatccatggatgatcttatttgtttcgccgacgcctttg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33656436 |
atccagaatccatggatgatcttatttgtttcgccgacgcttttg |
33656392 |
T |
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