View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5724-Insertion-1 (Length: 1096)

Name: NF5724-Insertion-1
Description: NF5724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5724-Insertion-1
NF5724-Insertion-1
[»] chr5 (5 HSPs)
chr5 (6-593)||(39757703-39758294)
chr5 (17-192)||(39764786-39764964)
chr5 (606-717)||(39759799-39759907)
chr5 (408-489)||(39765202-39765284)
chr5 (29-90)||(39764324-39764385)
[»] chr4 (4 HSPs)
chr4 (713-1016)||(52606540-52606846)
chr4 (725-885)||(27301007-27301168)
chr4 (724-851)||(40413574-40413702)
chr4 (725-783)||(29695979-29696037)
[»] chr1 (2 HSPs)
chr1 (714-885)||(386217-386389)
chr1 (725-794)||(50010691-50010760)
[»] chr2 (1 HSPs)
chr2 (725-885)||(7293492-7293653)
[»] chr8 (1 HSPs)
chr8 (725-793)||(42034816-42034884)
[»] scaffold0114 (1 HSPs)
scaffold0114 (723-864)||(38069-38211)
[»] chr7 (3 HSPs)
chr7 (724-794)||(8232650-8232720)
chr7 (724-851)||(36250225-36250353)
chr7 (725-839)||(43988561-43988675)
[»] chr3 (3 HSPs)
chr3 (972-1016)||(22977592-22977636)
chr3 (774-839)||(22977425-22977490)
chr3 (890-950)||(22977533-22977594)


Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 6 - 593
Target Start/End: Original strand, 39757703 - 39758294
Alignment:
Q  6 caattgtctcaataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39757703 caattgtctcaataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaat 39757802  T
Q  106 gacaataacaacaagatatcaagtgtaccgttaaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtcagaaaggcttctc 205  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39757803 gacaataacaacaagatatcaagtgtaccgttgaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtcagaaaggcttctc 39757902  T
Q  206 ctatgtttaatctaccttttgtttcatcaagtcatacgtcgttgaaatagtggagaaaaggaaaaatttgtttcgaagtagtgaaactcaagacagcaat 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39757903 ctatgtttaatctaccttttgtttcatca-gtcatacgtcgttgaaatagtggagaaaaggaaaaatttgtttcgaagtagtgaaactcaagacagcaat 39758001  T
Q  306 gattcagagcagacttcaatacttaaggatgctacttttggggtgggaaaatttgttccctatttgtatgctaacaagagaagtggtggcataggagaga 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39758002 gattcagagcagacttcaatacttaaggatgctacttttggggtgggaaaatttgttccctatttgtatgctaacaagagaagtggtggcataggagaga 39758101  T
Q  406 aaatggttgacaaggaggacaagggtcctttgcaatgacacaagaaaagcctcaagttaacaattgatttactacatagtttgctagcttcaatcataat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39758102 aaatggttgacaaggaggacaagggtcctttgcaatgacacaaaaaaagcctcaagttaacaatggatttactacatagtttgctagcttcaatcataat 39758201  T
Q  506 aatgcagttgcagtctgcttttgcttttaagctgttaaaacctatcaaacacggatacggacacc-----gacacaactaaattttttagaaa 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      |||||| ||||||||||||||||    
T  39758202 aatgcagttgcagtctgcttttgcttttaagctgttaaaacctatgaaacacggatacggacacgacacggacacagctaaattttttagaaa 39758294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 39764786 - 39764964
Alignment:
Q  17 ataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaatgacaataac-- 114  Q
    |||||||  ||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||  |||| |||||| || ||      
T  39764786 ataatatcagacaaaaagaagaatttttatggaaatggaatactgctaaatccatacttctttcaagtagtgaaactcatgtgaataatgacgatgacga 39764885  T
Q  115 -aacaagatatcaagtgtaccgttaaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtc 192  Q
     ||||||| |||||||||||| || |||| ||||||||||||||| ||||||||| ||| || ||||||| || |||||    
T  39764886 taacaagacatcaagtgtaccattgaagaattggatgccttcactgtcaggcttcgggggtgctggtttttctgtggtc 39764964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 606 - 717
Target Start/End: Original strand, 39759799 - 39759907
Alignment:
Q  606 gatcagggaagattgttttatgaatggaaaggatgggtatannnnnnnnnnnnagatattgtagtagttggaataaagttgtttgagtttgaccggtcaa 705  Q
    |||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||    
T  39759799 gatcagggaagattgttttatgaatggaaaggatgggtatattcttttttg---gatattgtagtagttggaataaagttgtttgagtttgaccggtcaa 39759895  T
Q  706 aatgataacatt 717  Q
    ||||||||||||    
T  39759896 aatgataacatt 39759907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 489
Target Start/End: Original strand, 39765202 - 39765284
Alignment:
Q  408 atggttgacaaggaggacaagggtcctttgcaatgacacaagaaaagcctcaagttaacaattgattt-actacatagtttgc 489  Q
    ||||||||||| ||| |||||||||||||||||| ||| | | ||  ||||||||||||||| ||||| ||| ||||||||||    
T  39765202 atggttgacaaagagaacaagggtcctttgcaataacatagggaacacctcaagttaacaatggatttaactccatagtttgc 39765284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 39764324 - 39764385
Alignment:
Q  29 aaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaa 90  Q
    |||| ||||||||| ||||||||||||||||| | ||| |||  |||| |||||||||||||    
T  39764324 aaaaggaagaatttatatggaaatggaatagtctcaaaaccacgcttccttcaagtagtgaa 39764385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 713 - 1016
Target Start/End: Original strand, 52606540 - 52606846
Alignment:
Q  713 acattaaggttctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatcct 812  Q
    ||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  52606540 acattaagggtctgtttgttttgggtgaaagtagtaggaaagattgaaggaggacagaaagtataaggattaacaatctttctatcgtttggaatatcct 52606639  T
Q  813 taaaaagaagaggaagggtattgatggctgggccccacactaagaatgtttcagctctattgaggacagaaagt---agaaatgcactatttgagcgaaa 909  Q
    |||||||| || |||| ||| |||||| ||||| |||||||||||||||||| ||||||||||||| |||||||   || ||||||||||||||| ||||    
T  52606640 taaaaagaggaagaagagtactgatggttgggctccacactaagaatgtttctgctctattgaggatagaaagtctaaggaatgcactatttgag-gaaa 52606738  T
Q  910 ttacataaaagtccacaaacacaaatg-ttttcaacgtgataataaagcatattagaattagaatataaagtaatgaaaataaatttttatggtcatctt 1008  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52606739 ttacataaaagcccacaaacacaaatgcttttcaacgtgataataaagcatattagaattagaatataaagtaatgaaaataaatttttatggtcatgtt 52606838  T
Q  1009 ctatcaaa 1016  Q
    ||||||||    
T  52606839 ctatcaaa 52606846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 725 - 885
Target Start/End: Original strand, 27301007 - 27301168
Alignment:
Q  725 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaagaagag 824  Q
    |||||||||||||||||| ||  |||||||||||||| ||||| ||||| | ||||||| | |||||||| || |||| |||   | ||||||||  |||    
T  27301007 tgtttgttttgggtgaaagtacaaggaaagattgaagaaggatggaaagaagaaggattgagaatctttccattgtttggaaccactttaaaaaggggag 27301106  T
Q  825 gaagggtattgatggctgggccccaca-ctaagaatgtttcagctctattgaggacagaaag 885  Q
    ||||| |  |||| |||||  |||||| | || |||||||| ||||||||| |||| |||||    
T  27301107 gaaggatgctgatagctggatcccacagcaaaaaatgtttccgctctattgtggacggaaag 27301168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 724 - 851
Target Start/End: Complemental strand, 40413702 - 40413574
Alignment:
Q  724 ctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaa-gaag 822  Q
    |||||||||||  | |||| ||  |||||||||||||  | |||||||||||  |||| ||||| ||||||  | |||| ||||| ||||||||| |  |    
T  40413702 ctgtttgttttaagggaaagtagaaggaaagattgaataaagatagaaagtaataggaataacattctttcctttgtttggaataaccttaaaaaggggg 40413603  T
Q  823 aggaagggtattgatggctgggccccaca 851  Q
    |||||||||| ||||||||||| ||||||    
T  40413602 aggaagggtaatgatggctgggtcccaca 40413574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 725 - 783
Target Start/End: Complemental strand, 29696037 - 29695979
Alignment:
Q  725 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggatt 783  Q
    ||||||||||| |||||| | | |||||||||||||| | ||||||||||| |||||||    
T  29696037 tgtttgttttgagtgaaagtgtaaggaaagattgaagaatgatagaaagtagaaggatt 29695979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 714 - 885
Target Start/End: Original strand, 386217 - 386389
Alignment:
Q  714 cattaaggttctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatcctt 813  Q
    |||||||| |||||||||||||||||| || || |||||||||||| | |||| | |||||| ||||| ||||||||||||  |  ||| ||||   |||    
T  386217 cattaagggtctgtttgttttgggtgacaacataaggaaagattgatgaaggacaaaaagtagaaggaataacaatctttcctttatttggaatcagctt 386316  T
Q  814 aaaaaga-agaggaagggtattgatggctgggccccacactaagaatgtttcagctctattgaggacagaaag 885  Q
    ||||| | ||||||| |||| ||||||||||| |||||||  | |||||||  |||||||||| ||| |||||    
T  386317 aaaaacagagaggaatggtaatgatggctgggtcccacacataaaatgtttatgctctattgaagacggaaag 386389  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 725 - 794
Target Start/End: Original strand, 50010691 - 50010760
Alignment:
Q  725 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttc 794  Q
    |||||||||||||||| |  || |||||||||||| | |||| |||||||| |||||||| |||||||||    
T  50010691 tgtttgttttgggtgacagcataaggaaagattgatgaaggagagaaagtagaaggattagcaatctttc 50010760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 725 - 885
Target Start/End: Complemental strand, 7293653 - 7293492
Alignment:
Q  725 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaaga-aga 823  Q
    |||||||||||||||| || || |||||||||||| | |||| |||||||| |||||||| |||||||||  | |||| ||||  ||||| |||||  ||    
T  7293653 tgtttgttttgggtgacaacataaggaaagattgatgaaggagagaaagtagaaggattagcaatctttccttagtttagaatcaccttagaaagaggga 7293554  T
Q  824 ggaagggtattgatggctgggccccacactaagaatgtttcagctctattgaggacagaaag 885  Q
    |||| | || |||||| |||| |||||||  | |||||||| |||||||||| ||| |||||    
T  7293553 ggaatgataatgatggttgggtcccacacataaaatgtttctgctctattgaagacggaaag 7293492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 725 - 793
Target Start/End: Original strand, 42034816 - 42034884
Alignment:
Q  725 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatcttt 793  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||||| | |||||  ||||||||    
T  42034816 tgtttgttttgggtgaaagtagtaggaaagattgaagaaggatagaaagtagagggattgccaatcttt 42034884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 723 - 864
Target Start/End: Complemental strand, 38211 - 38069
Alignment:
Q  723 tctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaaga-a 821  Q
    ||||||| |||||||||||| || ||||||||||||||| |||||||||||||  | |||||  | ||||||  | |||| |||   ||||| |||||      
T  38211 tctgtttattttgggtgaaagtagtaggaaagattgaagaaggatagaaagtagtaagattattattctttcctttgtttggaactaccttagaaagagg 38112  T
Q  822 gaggaagggtattgatggctgggccccacactaagaatgtttc 864  Q
    |||||||||||  | |||||||||||||||| || ||||||||    
T  38111 gaggaagggtacagttggctgggccccacacaaaaaatgtttc 38069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 724 - 794
Target Start/End: Complemental strand, 8232720 - 8232650
Alignment:
Q  724 ctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttc 794  Q
    ||||||||||||||||||| ||  |||||||||||| | |||||||||||||  |||||||||| ||||||    
T  8232720 ctgtttgttttgggtgaaagtagaaggaaagattgaggaaggatagaaagtagtaggattaacattctttc 8232650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 724 - 851
Target Start/End: Original strand, 36250225 - 36250353
Alignment:
Q  724 ctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaa-gaag 822  Q
    ||||||||||| || |||| ||  |||||||||||||  | |||||||||||  |||| ||||| ||||||  | |||| ||||| ||||||||| |  |    
T  36250225 ctgtttgttttaggggaaagtagaaggaaagattgaataaagatagaaagtaataggaataacattctttcctttgtttggaataaccttaaaaaggggg 36250324  T
Q  823 aggaagggtattgatggctgggccccaca 851  Q
    |||||||||| ||||||||||| ||||||    
T  36250325 aggaagggtaatgatggctgggtcccaca 36250353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 725 - 839
Target Start/End: Complemental strand, 43988675 - 43988561
Alignment:
Q  725 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaagaagag 824  Q
    |||||||||||||||| | |   ||||||||||||   ||||||||||||| |||||| | ||||||||| || |||| ||| | ||||||||||  |||    
T  43988675 tgtttgttttgggtgatagttgaaggaaagattgagtaaggatagaaagtagaaggatgagcaatctttccatagtttggaacaaccttaaaaaggtgag 43988576  T
Q  825 gaagggtattgatgg 839  Q
    ||||| || ||||||    
T  43988575 gaaggatactgatgg 43988561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 972 - 1016
Target Start/End: Original strand, 22977592 - 22977636
Alignment:
Q  972 atataaagtaatgaaaataaatttttatggtcatcttctatcaaa 1016  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  22977592 atataaagtaatgagaataaatttttatggtcatgttctatcaaa 22977636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 839
Target Start/End: Original strand, 22977425 - 22977490
Alignment:
Q  774 tataaggattaacaatctttctatcgtttcgaatatccttaaaaagaagaggaagggtattgatgg 839  Q
    ||||||||||||||||||||| || |||| ||| || |||||||||   |||||||||| ||||||    
T  22977425 tataaggattaacaatctttccattgtttggaaaattcttaaaaagggaaggaagggtactgatgg 22977490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 890 - 950
Target Start/End: Original strand, 22977533 - 22977594
Alignment:
Q  890 aatgcactatttgagcgaaattacataaaagtccacaaacacaaatg-ttttcaacgtgata 950  Q
    |||||||||||| || ||||||||||||||| ||||||| | ||||| ||| ||||||||||    
T  22977533 aatgcactatttaagtgaaattacataaaagcccacaaaaaaaaatgctttgcaacgtgata 22977594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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