View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5724_low_1 (Length: 335)
Name: NF5724_low_1
Description: NF5724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5724_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 7216372 - 7216141
Alignment:
| Q |
11 |
tgttgaaaaagttacacctccattagagcaagatgatatgaaatcaataccttggtggacgaatgatgaacttaacaagttgttccatgttttgaaataa |
110 |
Q |
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| T |
7216372 |
tgttgaaaaagttacacctccattagagcaagatgatatgaaatcaataccttggtggacgaatgatgaacttaacaagttgttccatgttttgaaataa |
7216273 |
T |
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| Q |
111 |
tcaaagatgataaatttcaggtgttgaagactttaagcaaatgtttatcaatgtgatgtcataatgtattagcacttgttacaaggtaaagagaaattag |
210 |
Q |
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| T |
7216272 |
tcaaagatgataaatttcaggtgttgaagactttaagcaaatgtttatcaatgtgatgtcataatgtatttgcacttgttacaaggtaaagagaaattag |
7216173 |
T |
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| Q |
211 |
gagagagaaattccaagtgacaactgggagac |
242 |
Q |
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| T |
7216172 |
gagagagaaattccaagtgacaactgggagac |
7216141 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 48759334 - 48759374
Alignment:
| Q |
58 |
taccttggtggacgaatgatgaacttaacaagttgttccat |
98 |
Q |
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| T |
48759334 |
taccttggtggacgaatgatgaagttgacaagctgttccat |
48759374 |
T |
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