View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5724_low_2 (Length: 329)
Name: NF5724_low_2
Description: NF5724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5724_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 32812639 - 32812904
Alignment:
| Q |
20 |
tgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtc |
119 |
Q |
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| T |
32812639 |
tgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtc |
32812738 |
T |
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| Q |
120 |
ttcatggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattg |
219 |
Q |
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| T |
32812739 |
ttcatggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtggtttatcataagaaggatattatactattg |
32812838 |
T |
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| Q |
220 |
ttcccttcttttcacggaggtgaaggtggtgatgatggggtaaatattattgtggctcttcctcct |
285 |
Q |
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| T |
32812839 |
ttcccttcttttcacggagttgaaggtggtgatgatggggtaaatattattgtggctcttcctcct |
32812904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 25 - 283
Target Start/End: Original strand, 32830174 - 32830432
Alignment:
| Q |
25 |
gagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcat |
124 |
Q |
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| T |
32830174 |
gagggttcaagaagaatgagtgatgaatatgcaagatctattattgattggggagagttgtataatggttttccaaatggggatgttttggtgtcttcat |
32830273 |
T |
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| Q |
125 |
ggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttccc |
224 |
Q |
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| T |
32830274 |
ggtggaggctagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtcctgtggtttatcataggaaggatattatactattatttcc |
32830373 |
T |
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| Q |
225 |
ttcttttcacggaggtgaaggtggtgatgatggggtaaatattattgtggctcttcctc |
283 |
Q |
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| T |
32830374 |
ttcttttaatggaggtgaaggtggtggtgacggagtaaatattatagtggctcttcctc |
32830432 |
T |
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