View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5724_low_3 (Length: 251)
Name: NF5724_low_3
Description: NF5724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5724_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 10699865 - 10700075
Alignment:
| Q |
10 |
aaatctttttctttttgagcaatggaaatcnnnnnnnagacactgtaaattaggactatccctagatttaaacctgttaagtaacatcttgaatttgagt |
109 |
Q |
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| T |
10699865 |
aaatctttttctttttgagcaatggaaatctttttttagacactgtaaattaggattatccttagatttaaacctgttaagtaacgtcttgaatttgagt |
10699964 |
T |
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| Q |
110 |
tatgcagatagaaaactgcgattaagatgagtgacc---ttataaaggtagttatttagattcttcgatcaaaaatagtttacatcaataacatagttga |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10699965 |
tatgcagatagaaaactgtgattaagatgagtgaccttattataaaggtagttatttagattcttcgatcaaaaatagtttacatcaataagatagttga |
10700064 |
T |
|
| Q |
207 |
aaaaacattct |
217 |
Q |
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| T |
10700065 |
aaaaacattct |
10700075 |
T |
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