View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5724_low_5 (Length: 239)

Name: NF5724_low_5
Description: NF5724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5724_low_5
NF5724_low_5
[»] chr4 (3 HSPs)
chr4 (1-221)||(2884025-2884245)
chr4 (40-221)||(2900719-2900900)
chr4 (64-221)||(2874094-2874251)
[»] chr2 (3 HSPs)
chr2 (62-221)||(44213416-44213575)
chr2 (51-222)||(44225576-44225747)
chr2 (51-221)||(44236391-44236560)
[»] chr7 (8 HSPs)
chr7 (154-212)||(39334906-39334964)
chr7 (154-212)||(39346164-39346222)
chr7 (150-212)||(39360711-39360773)
chr7 (148-212)||(39591926-39591990)
chr7 (149-212)||(39550849-39550912)
chr7 (184-212)||(39541591-39541619)
chr7 (184-212)||(39577449-39577477)
chr7 (65-137)||(39592093-39592165)
[»] chr6 (1 HSPs)
chr6 (184-218)||(3828412-3828446)
[»] chr1 (1 HSPs)
chr1 (180-218)||(2163921-2163959)
[»] chr3 (1 HSPs)
chr3 (181-217)||(8537388-8537424)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2884025 - 2884245
Alignment:
Q  1 tgttataagcgctcaattaaattgtttatacatggtctaatttacttgaaaattatgtagcttttgggattggatgtatgtgctgacactatggtgggga 100  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884025 tgttataagctctcaattaaattatttatacatggtctaatttacttgaaaattatgtagcttttgggattggatgtatgtgctgacactatggtgggga 2884124  T
Q  101 atgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgttggtcggaccagcaaatgcattgttcatggatgaaatatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  2884125 atgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgttggtcgggccagcaaatgcattattcatggatgaaatatc 2884224  T
Q  201 tactggtttggacagttccac 221  Q
    |||||||||||||||||||||    
T  2884225 tactggtttggacagttccac 2884245  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 2900900 - 2900719
Alignment:
Q  40 atttacttgaaaattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagc 139  Q
    ||||| |||||||| ||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||    
T  2900900 atttaattgaaaatcatacagcttttggggttggatgtatgtgctgatactatggtggggaatgaaatgttacgtggtatctccggaggacaaagaaagc 2900801  T
Q  140 gagttaccacaggagagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccac 221  Q
    |||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  2900800 gagttaccacaggagaaatgttggttggaccagcaaatgctttattcatggatgaaatatctactggcttggacagttccac 2900719  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 2874094 - 2874251
Alignment:
Q  64 ttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgttgg 163  Q
    ||||| |||||| |||||||||| || ||||| ||  ||||||||   |||||||| ||||| || ||||||||| || ||||||||||||| |||||||    
T  2874094 ttggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaatgttgg 2874193  T
Q  164 tcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccac 221  Q
    | |||||| | || |   | ||||||||||||||||| ||||| || || ||||||||    
T  2874194 ttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccac 2874251  T

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Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 44213575 - 44213416
Alignment:
Q  62 ttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccacaggagagatgtt 161  Q
    ||||||| |||||| ||||||| || || ||||| ||| ||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  44213575 ttttggggttggatatatgtgcggataccatggtaggggatgaaatgttgcgtggtatctccggaggacaaaggaagcgtgttaccacaggagagatgtt 44213476  T
Q  162 ggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccac 221  Q
    ||| |||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||    
T  44213475 ggttggaccagccaatgcattgttcatggatgaaatttctactggactggacagttccac 44213416  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 44225747 - 44225576
Alignment:
Q  51 aattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccaca 150  Q
    |||| ||||| ||||||| |||||| |||| || || || ||||||||  |||||||||| |||||||| || ||||| || || ||||| || || |||    
T  44225747 aattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactaca 44225648  T
Q  151 ggagagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccact 222  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  44225647 ggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccact 44225576  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 51 - 221
Target Start/End: Complemental strand, 44236560 - 44236391
Alignment:
Q  51 aattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccaca 150  Q
    |||| ||||| ||||||| |||||| |||| || || || ||||||||  |||||||||| |||||||| || ||||| || || ||||| || || |||    
T  44236560 aattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactaca 44236461  T
Q  151 ggagagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttggacagttccac 221  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  44236460 ggagagatgttggttggaccagccaatgcattgttcatggatg-aatttctactgggctggacagttccac 44236391  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 39334906 - 39334964
Alignment:
Q  154 gagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttgga 212  Q
    ||||||||||| |||||| | || || || |||||||||||||||||||||||||||||    
T  39334906 gagatgttggttggaccaactaaagctttattcatggatgaaatatctactggtttgga 39334964  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 39346164 - 39346222
Alignment:
Q  154 gagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttgga 212  Q
    ||||||||||| |||||| | || || || |||||||||||||||||||||||||||||    
T  39346164 gagatgttggttggaccaactaaagctttattcatggatgaaatatctactggtttgga 39346222  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 39360711 - 39360773
Alignment:
Q  150 aggagagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttgga 212  Q
    ||||||||||||||| |||||  | || || || |||||||||||||||||||||||||||||    
T  39360711 aggagagatgttggttggaccgactaaagctttattcatggatgaaatatctactggtttgga 39360773  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 39591990 - 39591926
Alignment:
Q  148 acaggagagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttgga 212  Q
    ||||| |||||| |||| |||||||| || ||  | |||||||||||||||||||||||||||||    
T  39591990 acaggggagatgctggtaggaccagctaaggctcttttcatggatgaaatatctactggtttgga 39591926  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 39550912 - 39550849
Alignment:
Q  149 caggagagatgttggtcggaccagcaaatgcattgttcatggatgaaatatctactggtttgga 212  Q
    |||| ||||||||||| ||||| || || ||  | |||||||||||||||||||||||||||||    
T  39550912 caggggagatgttggttggaccggcgaaagctctattcatggatgaaatatctactggtttgga 39550849  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 39541619 - 39541591
Alignment:
Q  184 ttcatggatgaaatatctactggtttgga 212  Q
    |||||||||||||||||||||||||||||    
T  39541619 ttcatggatgaaatatctactggtttgga 39541591  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 39577477 - 39577449
Alignment:
Q  184 ttcatggatgaaatatctactggtttgga 212  Q
    |||||||||||||||||||||||||||||    
T  39577477 ttcatggatgaaatatctactggtttgga 39577449  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 39592165 - 39592093
Alignment:
Q  65 tgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaa 137  Q
    ||||||||||  ||||||| || ||| ||||||| |||||||||||  | |||||||| ||||| ||||||||    
T  39592165 tgggattggagatatgtgcagatactgtggtgggaaatgaaatgttaagaggtatttctggaggacaaagaaa 39592093  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 3828446 - 3828412
Alignment:
Q  184 ttcatggatgaaatatctactggtttggacagttc 218  Q
    ||||||||||||||||| |||||||||||||||||    
T  3828446 ttcatggatgaaatatcgactggtttggacagttc 3828412  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 2163959 - 2163921
Alignment:
Q  180 attgttcatggatgaaatatctactggtttggacagttc 218  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  2163959 attgttcatggacgaaatatcaactggtttggacagttc 2163921  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 8537424 - 8537388
Alignment:
Q  181 ttgttcatggatgaaatatctactggtttggacagtt 217  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  8537424 ttgttcatggatgaaatatcaactggcttggacagtt 8537388  T

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