View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725-Insertion-1 (Length: 1118)
Name: NF5725-Insertion-1
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725-Insertion-1 |
 | |
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| [»] scaffold0018 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 25 - 532
Target Start/End: Complemental strand, 41572907 - 41572399
Alignment:
| Q |
25 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtctgcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
41572907 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatggc |
41572808 |
T |
|
| Q |
125 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41572807 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtgggaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
41572708 |
T |
|
| Q |
225 |
gatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtacggtggaggctgtgaag |
323 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41572707 |
gatttggcatgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcaggtggagggtacggtggaggctgtgaag |
41572608 |
T |
|
| Q |
324 |
gttatatcgaggagatgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgag |
423 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41572607 |
gttatatcgtggagatgtattcttagccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaatgag |
41572508 |
T |
|
| Q |
424 |
gaggtgttcagcggttttagcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggca |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41572507 |
gaggtgttcagcggttttagcagtaaacaagtttgaggctggggtatgctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggca |
41572408 |
T |
|
| Q |
524 |
gcctcatta |
532 |
Q |
| |
|
|||| |||| |
|
|
| T |
41572407 |
gccttatta |
41572399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-118
Query Start/End: Original strand, 663 - 978
Target Start/End: Complemental strand, 41572279 - 41571956
Alignment:
| Q |
663 |
atctgagccctttgtaattctgtttgttatctagccgcgggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaa |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41572279 |
atctgagccctttgtaattctgtttgttatctagccgcgggttttcgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaa |
41572180 |
T |
|
| Q |
763 |
tataatattaaatccaccattttgcccttcaaatcaataccgctgagacattatggtactcaaatttactaagtgaggtctatgtttgaaaccgcgggaa |
862 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
41572179 |
tataatattaaatccaccattttgcccttcaaatcaataccgctaagacagtttggtactcaaatttactaagtgagttctatgcttgaaaccgcgggaa |
41572080 |
T |
|
| Q |
863 |
gcaac-aatgttaacttctcattttcaggtc-gaaagtttcatggacgcgcgactgtggtg-aaagaattggaacc-aacagtctcgaca-ctt-atctc |
956 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| | ||||||| |||||||||||||| |||||| ||||||| ||||||||||||| ||| ||||| |
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|
| T |
41572079 |
gcaacaaatgttaacttctcattttcaggtcaaaaaatctcatggatgcgcgactgtggtgaaaagaagtggaaccaaacagtctcgacagcttaatctc |
41571980 |
T |
|
| Q |
957 |
tcaa--ttaaaaatatcgatgaaa |
978 |
Q |
| |
|
|||| | |||||||||||||||| |
|
|
| T |
41571979 |
tcaaattaaaaaatatcgatgaaa |
41571956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 769 - 937
Target Start/End: Complemental strand, 41584583 - 41584415
Alignment:
| Q |
769 |
attaaatccaccattttgcccttcaaatcaataccgctgagacattatggtactcaaatttactaagtgaggtctatgtttgaaaccgcgggaagcaac- |
867 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | || ||| |||||||||||||||||||||||||| |
|
|
| T |
41584583 |
attaaatccaccattttgcccttcaaatcaataccgctgagacattttcgtactcaaattaaaaaa---aggcctatgtttgaaaccgcgggaagcaaca |
41584487 |
T |
|
| Q |
868 |
aatgttaacttctcattttcaggtcgaaa-gtttcatggacgcgcgactgtggtg-aaagaattggaaccaa |
937 |
Q |
| |
|
||| ||||||||||||||||| || ||| || | |||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
41584486 |
aatattaacttctcattttcacatcaaaaggtcttatggacgcgcgattgtggtgaaaagaagtggaaccaa |
41584415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 28 - 532
Target Start/End: Original strand, 27753590 - 27754102
Alignment:
| Q |
28 |
ggacgattcggtgaattgtgttttgtgtgaggggaatccggagtctgcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtg |
127 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||| ||||||| ||||| ||||||| ||| |
|
|
| T |
27753590 |
ggacgattcggtgaattgtgttctgtgtgaggggaatccggagtcggcaagtcactt-ttcattcaatgctcctttgctaaggaggggtggaatggggtg |
27753688 |
T |
|
| Q |
128 |
ttgaggtgg---------ctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggatt |
218 |
Q |
| |
|
||||||| | ||||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27753689 |
ctgaggtgttagagatgaccttggagcttccgatcaatttgtttctgctgtgggaggattggaatgtggcagcagggagtaataagatccgtaagggatt |
27753788 |
T |
|
| Q |
219 |
ccgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcgg-tggagggtacggtggaggct |
317 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||| |||||| ||||||||||||| |
|
|
| T |
27753789 |
ccggttgatttggcacgccgtagtgtggaatttatggagggtgagaaatgaccgaattttcaaaaatgcggtttatcgggtggaggatacggtggaggct |
27753888 |
T |
|
| Q |
318 |
gtgaaggttatatcgaggagatgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggt |
417 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27753889 |
gtgaaggttatgtcgtggagatggtttcttagccgtttgaaggtgccggcgtgtttgttctacgagtgaagttggaatccaaaagcgtgcctcttacggt |
27753988 |
T |
|
| Q |
418 |
aatgaggaggtgttcagcggttttagcagtaaacaagtttgaggctggggtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27753989 |
aatgaggaggtgttcagcggttttagcagt-aacaagtttgaggctggggtatgctgtttatattgcggtgacccgtgctggttttgtgcagttttgcat |
27754087 |
T |
|
| Q |
518 |
atggcagcctcatta |
532 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27754088 |
atggcagcctcatta |
27754102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 663 - 762
Target Start/End: Original strand, 27754232 - 27754330
Alignment:
| Q |
663 |
atctgagccctttgtaattctgtttgttatctagccgcg-ggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaa |
761 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
27754232 |
atctgagccctttgtaattctgtttgttttctagccgcgagttttttgtgtgcttcttgcacacacttgtc--gtgaataaaatttgccgtttctaaaaa |
27754329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 10909566 - 10909508
Alignment:
| Q |
223 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
281 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10909566 |
ttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaa |
10909508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 9e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 138 - 531
Target Start/End: Complemental strand, 21942311 - 21941917
Alignment:
| Q |
138 |
tatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgcc |
237 |
Q |
| |
|
||||||||||| | | || ||||| |||||||| ||| |||||||||||||| || | ||| ||| || ||||| ||||| ||| ||||||| ||| |
|
|
| T |
21942311 |
tatggagcttctgttaaatttgtttgtgctgtgggaggtctggaatgtggcagcgggtaataatgggattcgcaagggcttccggttggtttggcatgcc |
21942212 |
T |
|
| Q |
238 |
gtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgt-cggtggagggtacggtggaggctgtgaaggttatatcgagga |
336 |
Q |
| |
|
|| ||||| ||| | | ||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||||||||| |||||||| || ||| ||| |
|
|
| T |
21942211 |
gtcgtgtgaaatctttggagggtgagaaatgatcttattttcaaaaatgcagtttgtggggtgaaggatacggtggaggcagtgaaggtaatgtcgtgga |
21942112 |
T |
|
| Q |
337 |
gatgtattctt-tgccgtttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaaaagcgtgcctcttacggtaa-tgaggaggtgttcag |
434 |
Q |
| |
|
|||| ||||| ||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||| || ||||||| |||| || | | | || | |
|
|
| T |
21942111 |
gatg-gttcttgagccgtttaaagatgccgacgtgtttgttctacgagtggtgttggaatccaaaagcatgtctcttacagtaacggacgggtttctctg |
21942013 |
T |
|
| Q |
435 |
cggttttagcagtaaacaagtttgaggctggggtatcctgtg-tatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatt |
531 |
Q |
| |
|
| ||||| |||| ||||| ||||||||||||||| | ||| || ||||||||||| |||||||| ||||||||| | | |||||||||||||||| |
|
|
| T |
21942012 |
cagttttcgcag-ctacaagattgaggctggggtatgccgtgttaaattgcggtgacatgtgctgg-tttgtgcaggatggtatatggcagcctcatt |
21941917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 664 - 765
Target Start/End: Complemental strand, 21941778 - 21941680
Alignment:
| Q |
664 |
tctgagccctttgtaattctgtttgttatctagccgcgggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaat |
763 |
Q |
| |
|
|||||||||| |||||||||||||||| | | ||||| ||||| ||||| ||||||| || || ||| |||||||||| || || ||||||||||||| |
|
|
| T |
21941778 |
tctgagccctctgtaattctgtttgtt-tatgcccgcgagttttagtgtgtttcttgcacaaactcgt--agtgaataaatttagccgtttctaaaaaat |
21941682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 26728609 - 26728711
Alignment:
| Q |
34 |
ttcggtgaattgtgttttgtgtgaggggaatccggagtctgcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtgttgagg |
133 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||| | || ||| ||||||||||| ||| ||||||||||||||| ||||| | ||||| |||| |
|
|
| T |
26728609 |
ttcggtgagctgtgttttgtgtgaggggaatgcagagtccgtgaatcatttgttcattcattgtaagtttgctatggaggtgtggaaaggcgtgtggagg |
26728708 |
T |
|
| Q |
134 |
tgg |
136 |
Q |
| |
|
||| |
|
|
| T |
26728709 |
tgg |
26728711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 13725863 - 13725921
Alignment:
| Q |
223 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
281 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
13725863 |
ttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaa |
13725921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 26728806 - 26728864
Alignment:
| Q |
220 |
cgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaatttt |
278 |
Q |
| |
|
|||||||||||||| ||||| ||||||| | ||| ||||| ||||||||| |||||||| |
|
|
| T |
26728806 |
cgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttt |
26728864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 138683 - 138728
Alignment:
| Q |
354 |
ttgaaggtgccggcgtgtttgttctacgagtggagttggaatccaa |
399 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
138683 |
ttgaacgtgccggcttgtttgttttacgagtggagttggaacccaa |
138728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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