View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725-Insertion-12 (Length: 515)
Name: NF5725-Insertion-12
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725-Insertion-12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 57 - 298
Target Start/End: Original strand, 3151792 - 3152033
Alignment:
| Q |
57 |
tgtgtgtatctgatactttcccttctattatggtattgtgcagtttaaaagtatttgcctttgctggaattgttgggacaatctttcttcttcccgttaa |
156 |
Q |
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| T |
3151792 |
tgtgtatatctgatactttcctttctattatggtattgtgcagtttaaaagtatttgcctttgctggaattgttgggacaatctttcttcttccagttaa |
3151891 |
T |
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| Q |
157 |
ttatatggggactcagattcgtgatgattccgagcctcagaaaacgtcattggattccttcagtatttcaaatgttaacaatggttcagacaggtgagtc |
256 |
Q |
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| T |
3151892 |
ttacatggggactcagatttgtgatgattccgagtctcagaaaacgtcattggattcctttagtatttcaaacgttaacaatggttcgcacaggtgagtc |
3151991 |
T |
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| Q |
257 |
ccacttgaatggaacaggaagttctgacatgattatcaagaa |
298 |
Q |
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| T |
3151992 |
ccacttgaatggaacatgaagttctgacatggttatcaagaa |
3152033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 430 - 515
Target Start/End: Original strand, 3152130 - 3152215
Alignment:
| Q |
430 |
aaatttgatttgatttacttaatttttatctaagttataacatgggaactctgatcgctagatttggcctttatcaaggttatgga |
515 |
Q |
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| T |
3152130 |
aaatttcaattgttttagttaatttttatctaagttataacatgggacctctgatcgctagatttggcctttatcaaggttatgga |
3152215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 4005715 - 4005772
Alignment:
| Q |
458 |
tctaagttataacatgggaactctgatcgctagatttggcctttatcaaggttatgga |
515 |
Q |
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| T |
4005715 |
tctaagttataacatgaaaattctgatacctagatttggcctttatcaaggttatgga |
4005772 |
T |
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