View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725-Insertion-13 (Length: 305)
Name: NF5725-Insertion-13
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725-Insertion-13 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 4302825 - 4303124
Alignment:
| Q |
7 |
acattatacaaagggtactctcaccatttggtgttctgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaa |
105 |
Q |
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| T |
4302825 |
acattatactaagggtactctcaccatttggtgttctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaa |
4302924 |
T |
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| Q |
106 |
aggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatca |
205 |
Q |
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| T |
4302925 |
aggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatca |
4303024 |
T |
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| Q |
206 |
agtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttg |
305 |
Q |
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| T |
4303025 |
agtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttg |
4303124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 35681633 - 35681914
Alignment:
| Q |
17 |
aagggtactctcaccatttggtgttctgc---atgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggat |
112 |
Q |
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| T |
35681633 |
aagggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggat |
35681732 |
T |
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| Q |
113 |
tcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgatt |
212 |
Q |
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| T |
35681733 |
tcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacagaattatcaagtgagt |
35681832 |
T |
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| Q |
213 |
ctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgg |
294 |
Q |
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| T |
35681833 |
ctgctattgttggtaccttgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtgg |
35681914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 31635512 - 31635698
Alignment:
| Q |
7 |
acattatacaaagggtactctcaccatttggtgttctgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaa |
105 |
Q |
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| T |
31635512 |
acattataccaagggtactctcaccatttggtgttctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaa |
31635611 |
T |
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| Q |
106 |
aggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttat |
193 |
Q |
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| T |
31635612 |
aggggattcgtcta-tgtgttggtttcatttattcttatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaacttat |
31635698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 31635882 - 31636002
Alignment:
| Q |
185 |
ctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatggg |
284 |
Q |
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| T |
31635882 |
ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg |
31635981 |
T |
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| Q |
285 |
atccgggtgggtgtgctcttg |
305 |
Q |
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| T |
31635982 |
atccgggtgggtgtgctcttg |
31636002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 37192733 - 37193022
Alignment:
| Q |
17 |
aagggtactctcaccatttggtgttctgcatgttattaaac-tttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcg |
115 |
Q |
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| T |
37192733 |
aagggtactctcaccatttgatgttctgcatgttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatcca |
37192832 |
T |
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| Q |
116 |
tcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctg |
215 |
Q |
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| T |
37192833 |
cttactgtgttggtttcattcattcctatacttcaagtacaacatggtcaggcatcacttaacaatgctctagcttgtatagaattatcaagtgcgtctg |
37192932 |
T |
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| Q |
216 |
ctattgttggtacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttg |
305 |
Q |
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| T |
37192933 |
caattgttggtacattgctcagtggctgctttgtccataaaaagggaccctcacagttcactcaatgggatccaggaggatgttctcttg |
37193022 |
T |
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