View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725-Insertion-16 (Length: 43)

Name: NF5725-Insertion-16
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725-Insertion-16
NF5725-Insertion-16
[»] chr3 (5 HSPs)
chr3 (12-43)||(6165875-6165906)
chr3 (8-43)||(6235066-6235101)
chr3 (8-43)||(6242230-6242265)
chr3 (14-43)||(6879563-6879592)
chr3 (9-43)||(6256186-6256219)


Alignment Details
Target: chr3 (Bit Score: 32; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 6165875 - 6165906
Alignment:
Q  12 caactatgattagaaaacaccaaatttcactg 43  Q
    ||||||||||||||||||||||||||||||||    
T  6165875 caactatgattagaaaacaccaaatttcactg 6165906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 6235066 - 6235101
Alignment:
Q  8 ggttcaactatgattagaaaacaccaaatttcactg 43  Q
    ||||||||||||||||||||| ||||||||||||||    
T  6235066 ggttcaactatgattagaaaataccaaatttcactg 6235101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 6242230 - 6242265
Alignment:
Q  8 ggttcaactatgattagaaaacaccaaatttcactg 43  Q
    |||||||||||||||| |||||||||||||||||||    
T  6242230 ggttcaactatgattaaaaaacaccaaatttcactg 6242265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 6879563 - 6879592
Alignment:
Q  14 actatgattagaaaacaccaaatttcactg 43  Q
    ||||||||||||||||||||||||||||||    
T  6879563 actatgattagaaaacaccaaatttcactg 6879592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 6256186 - 6256219
Alignment:
Q  9 gttcaactatgattagaaaacaccaaatttcactg 43  Q
    |||||||||||||||||||| ||||||||||||||    
T  6256186 gttcaactatgattagaaaa-accaaatttcactg 6256219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University