View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725-Insertion-2 (Length: 929)
Name: NF5725-Insertion-2
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 847; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 10 - 929
Target Start/End: Original strand, 3521034 - 3521943
Alignment:
| Q |
10 |
aattatttccagatgatatcactcacatcagcacaagaattgccggaacaacstatgtatatttagttttgatgtttataattggactataaaaatgatg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3521034 |
aattatttccagatgatatcactcacatcagcacaagaattgccggaacaacgtatgtatatttagttttgatgtttataattggactataaaaatgatg |
3521133 |
T |
|
| Q |
110 |
gataatttacactgcatttggttttcttcatttcaacagtggttacttggcaccagaatatgctttaggtggacagttaaccaagaaggctgatgtatac |
209 |
Q |
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| T |
3521134 |
gataatttacactgcatttggttttcttcatttcaacagtggttatttggcaccagaatatgcattaggtggacagttaaccaagaaggctgatgtatac |
3521233 |
T |
|
| Q |
210 |
agttttggagttcttatacttgaaataataagtggtaaaagcagctcaaggacaaactgggatggatcacataaatcccttctagaatgggtacacaaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3521234 |
agttttggagttcttatacttgaaataataagtggtaaaagcagctcaaggacaaactgggatggatcacataaatcccttctagaatgggtacacaaat |
3521333 |
T |
|
| Q |
310 |
ctcaatttcctatatttataagttttgcatcattataaatttaatgttttttaggtctacaaatgaatattatttaagtctatgaaatcttaaacatctc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3521334 |
ctcaatttcctatatttataagttttgcatcattataaatttaatgttttttaggtctacaaatgaatattatttaagtctatgaaatcttaaacatctc |
3521433 |
T |
|
| Q |
410 |
cttatcatatattgatgattatgtgttcttaacaggcatggcaacttcatgaagaggagaaatggttggcgctagtagatccggagatggaagaatttcc |
509 |
Q |
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| T |
3521434 |
cttatcatatattgatcattatgtgttcttaacaggcatggcaacttcatgaagaggagaaatggttggcgctagtagatccggagatggaagaatttcc |
3521533 |
T |
|
| Q |
510 |
tgagaaagaggtaatcaagtacattaaggttgcccttttctgcacacaagctgcagcaagaagaagaccgttgatgactcaggttgtggatatgctctca |
609 |
Q |
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| T |
3521534 |
tgagaaagaggtaatcaagtacattaaggttgcccttttctgcacacaagctgcagcaagaagaagaccgttgatgactcaggttgtggatatgctctca |
3521633 |
T |
|
| Q |
610 |
aaggaaattcagctcaacgataaacaactaacagcaccaggattgttcaattatgatgcaggagaaacttctcaaaagaaatcaaatcctgaatctttag |
709 |
Q |
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| T |
3521634 |
aaggaaattcagctcaacgataaacaactaacagcaccaggattgttcaattatgatgcaggagaaacttctcaaaagaaatcaaatcctgaatctttag |
3521733 |
T |
|
| Q |
710 |
tttatcacactagttctactcagcctagtattaccgaggttacagctaggtgataatgcttatgttattctttgtgtgaattgcagagttgtaaaatgaa |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||||| |
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| T |
3521734 |
tttatcacactagttctactcagcctagtattaccgaggttacagctaggtgatgatgctta----------tgtgtgaattgcaaagttgtaagatgaa |
3521823 |
T |
|
| Q |
810 |
agaaaaatgtaattattttttacatagaaattagtagattagtccaagcggcggtgaggaacttggttctccttgattaagatcttggaattgccatcta |
909 |
Q |
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| T |
3521824 |
agaaaaatgtaattattttttacatagaaattagtagattagtccaagtggtggtgaggaacttggttctccttgattaagatcttggatttgccatcta |
3521923 |
T |
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| Q |
910 |
taaatgagtaagatagatgc |
929 |
Q |
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|||||||||||||||||||| |
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| T |
3521924 |
taaatgagtaagatagatgc |
3521943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 35586779 - 35586904
Alignment:
| Q |
145 |
acagtggttacttggcaccagaatatgctttaggtggacagttaaccaagaaggctgatgtatacagttttggagttcttatacttgaaataataagtgg |
244 |
Q |
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|||| ||||| || ||||| |||||||| | || || |||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||| ||||| |
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| T |
35586779 |
acagcggttatttagcacctgaatatgcaatgggagggcagttaaccatgaaggctgatgtatatagttttggggttcttatacttgaagtaattagtgg |
35586878 |
T |
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| Q |
245 |
taaaagcagctcaaggacaaactggg |
270 |
Q |
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| T |
35586879 |
ccaaagcagtgcgaggacaaactggg |
35586904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 439 - 650
Target Start/End: Original strand, 35587051 - 35587262
Alignment:
| Q |
439 |
taacaggcatggcaacttcatgaagaggagaaatggttggcgctagtagatccggagatggaagaatttcctgagaaagaggtaatcaagtacattaagg |
538 |
Q |
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|||||||| ||||| |||||||||||||||| | ||||| ||| || ||||| || |||| ||||||||| || ||||||| || | |||||| || | |
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| T |
35587051 |
taacaggcgtggcagcttcatgaagaggagagactgttggagcttgtggatccagacatggttgaatttcctaaggaagaggtgattaggtacatgaaag |
35587150 |
T |
|
| Q |
539 |
ttgcccttttctgcacacaagctgcagcaagaagaagaccgttgatgactcaggttgtggatatgctctcaaaggaaattcagctcaacgataaacaact |
638 |
Q |
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| || |||||||||||||||| |||||||| |||| || | |||| | || ||||| ||||||||||| ||| |||| |||||| || || ||| | |
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| T |
35587151 |
tagcttttttctgcacacaagcagcagcaagccgaaggccatcgatgtcacaagttgttgatatgctctccaagaaaatcaggctcaatgaaaagcaaat |
35587250 |
T |
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| Q |
639 |
aacagcaccagg |
650 |
Q |
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|||||||||||| |
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| T |
35587251 |
aacagcaccagg |
35587262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 35586462 - 35586514
Alignment:
| Q |
12 |
ttatttccagatgatatcactcacatcagcacaagaattgccggaacaacsta |
64 |
Q |
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| T |
35586462 |
ttatttccagatgacatcactcatattagcacaagaattgccggaacaacgta |
35586514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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