View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725-Insertion-4 (Length: 886)

Name: NF5725-Insertion-4
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725-Insertion-4
NF5725-Insertion-4
[»] chr5 (25 HSPs)
chr5 (8-886)||(9288911-9289791)
chr5 (8-604)||(9293432-9294011)
chr5 (14-321)||(9298045-9298364)
chr5 (10-160)||(9372962-9373115)
chr5 (423-603)||(9298467-9298644)
chr5 (14-160)||(9302282-9302429)
chr5 (14-152)||(9332707-9332846)
chr5 (242-321)||(9372803-9372881)
chr5 (685-885)||(9298677-9298884)
chr5 (242-598)||(9355443-9355811)
chr5 (723-884)||(9294127-9294293)
chr5 (242-321)||(9366889-9366967)
chr5 (242-321)||(9309215-9309290)
chr5 (242-321)||(9348255-9348330)
chr5 (495-559)||(9308207-9308271)
chr5 (14-155)||(9367053-9367193)
chr5 (50-225)||(9348370-9348549)
chr5 (14-58)||(9305906-9305950)
chr5 (688-805)||(9307670-9307789)
chr5 (14-58)||(9352431-9352475)
chr5 (425-541)||(9366651-9366766)
chr5 (688-733)||(9347578-9347623)
chr5 (633-665)||(9372590-9372622)
chr5 (688-730)||(9355009-9355051)
chr5 (343-436)||(9309090-9309182)


Alignment Details
Target: chr5 (Bit Score: 777; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 8 - 886
Target Start/End: Original strand, 9288911 - 9289791
Alignment:
Q  8 ctatgaatattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagtttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9288911 ctatgaatattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagtttc 9289010  T
Q  108 ctcctctgctgccacattacactcatcaattaaattattaaaattggttctgcttgttgcttctccgattacgtgccactcgtgcatacacaaacaacta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9289011 ctcctctgctgccacattacactcatcaattaaattattaaaattggttctgcttgttgcttctccgattacgtgccactcgtgcatacacaaacaacta 9289110  T
Q  208 atccattattttgttctactgaatataaatcataataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9289111 atccattattttgttctactgaatataaatcataataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaa 9289210  T
Q  308 aaatccattctttacctgttctcgcatctcaacagggaacatgccaggtaatagatacctctgaaccaaaaacagcacctttttattatattagaaacaa 407  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9289211 aaatccattctttacctgttctcgcatctcgacagggaacatgccaggcaatagatacctctgaaccaaaaacagcacctttttattatattagaaacaa 9289310  T
Q  408 agtgataat-aaggtttttgtttaccaacactcagaggacatgtcagttaactatacacctcaaatacatcacattaccattatgtactgtataataatg 506  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9289311 agtgataatgaaggtttttgtttaccaacactcagaggacatgccagttaactatacacctcaaatacatcacattaccattatggactgtataataatg 9289410  T
Q  507 cacaatgtatggctcaattgggacaagtttaccaaattttaaggaaaactcatttagttaccaccacatgctcatattgattcagagaggttagctacac 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9289411 cacaatgtatggctcaattgggacaagtttaccaaattttaaggaaaactcatttagttaccaccacatgctcatattgattcagagaggttagctacac 9289510  T
Q  607 tacatttgctgcannnnnnnnnnnnnaatgaagcatgaattgctttctattatatatagtgttaaagaagatgaaatttgttaggaagttgatcgcatca 706  Q
    ||||| |||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9289511 tacatgtgctgca---ttttttttttaatgaagcatgaattgctttctattatatatagtgttaaagaagatgaaatttgttaggaagttgatcgcatca 9289607  T
Q  707 ttgaagaaggtggatggagaatttggactatcaccattatcgaatgaagattatgaactcactgtttttactagagtgcttagggaattcattgttacat 806  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9289608 ttgaagaaggtggatggagaatttggactatcaccattattgaatgaagattatgaactcactgtttttactagagtgcttagggaattcattgttacat 9289707  T
Q  807 ttttcatctttcaatctcttttatcatgcata-----agaggatacttatcatgtgaagagaacgtgagaatttcaatgagttgt 886  Q
    ||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9289708 ttttcatctttcaatctcttttatcatgcataagaggagaggatac-tatcatgtgaagagaacttgagaatttcaatgagttgt 9289791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 8 - 604
Target Start/End: Original strand, 9293432 - 9294011
Alignment:
Q  8 ctatgaatattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagtttc 107  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||  ||||||||| ||||||| |||||||||     
T  9293432 ctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttcatagtgttggcaatcataaaacctcattagtcatcagtaagtttt 9293531  T
Q  108 ctcctctgctgccacattacactcatcaattaaattattaaaattggttctgcttgttgcttctccgattacgtgccactcgtgcatacacaaacaacta 207  Q
    |||||||||||||||||| |             ||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  9293532 ctcctctgctgccacatttct------------attataaatcttggtgctgcttgttgcttctccgattacgtgccactcgtgcatacacaaccaacga 9293619  T
Q  208 atccattattttgttctactgaa-tataaatcataataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttca 306  Q
    ||||||||||||||| |||| || | ||||||||||||||| |||||||||||||||||||||||| ||    ||||||||||||||||||||||||||     
T  9293620 atccattattttgttatactaaaatgtaaatcataataatttatattgttgtctgtcttttgatcaaat----cccacaagatctggatctcatccttct 9293715  T
Q  307 aaaatccattctttacctgttctcgcatctcaacagggaacatgccaggtaatagatacctctgaaccaaaaacagcacctttttattatattagaaaca 406  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  9293716 aaaatccattctttaccagttctagcacctcaacagggaacatgccagccaattgatacctctgaaccaaaaacagcaccgttttattatattagtaaca 9293815  T
Q  407 aagtgataat-aaggtttttgtttaccaacactcagaggacatgtcagttaactatacacctcaaatacatcacattaccattatgtactgtataataat 505  Q
    |||||||||| ||||||||||||||||||||||  |||||||| | |||||| ||||||||||||||||||  ||||||||||||| || ||||||||||    
T  9293816 aagtgataatgaaggtttttgtttaccaacactttgaggacatttaagttaattatacacctcaaatacatttcattaccattatggacagtataataat 9293915  T
Q  506 gcacaatgtatggctcaattgggacaagtttaccaaattttaaggaaaactcatttagttaccaccacatgctcatattgattcagagaggttagctac 604  Q
    ||||||||| |||| ||| |  ||||||||||||||||||||||||||||   ||| ||  | |||||||||||| || |||| |||||||||||||||    
T  9293916 gcacaatgtttggcacaaatttgacaagtttaccaaattttaaggaaaac---ttttgtagctaccacatgctcacatggattaagagaggttagctac 9294011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 9298045 - 9298364
Alignment:
Q  14 atattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagtttcctcctc 113  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  9298045 atattaaaatgagtttgagatgcatgatgaatatagctgccatgtctttatagtgttggcaatcagaaaacatcattagtcattagtaagtttcctcctc 9298144  T
Q  114 tgctgccacattacactcatcaattaaattattaaaattggttctgcttgttgcttctccgattacgtgccactcgtgcatacacaaacaactaatccat 213  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  9298145 tgctgccacattacattcatcaattaaattatgaaaattggtgctgcttgttgcttctccgattacgtgccactcgtacatacacaacctactaatccat 9298244  T
Q  214 tattttgttctactgaatataaatcata----------------ataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatct 297  Q
    ||||||||| |||| ||| | |||||||                ||||||||||||||||||||||||||||||    ||||||| ||||||||||||||    
T  9298245 tattttgttttactaaatgttaatcataatagtttttttgttacataattgatattgttgtctgtcttttgatc----atatccctcaagatctggatct 9298340  T
Q  298 catccttcaaaaatccattcttta 321  Q
    |||||||||||||| |||||||||    
T  9298341 catccttcaaaaattcattcttta 9298364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 9373115 - 9372962
Alignment:
Q  10 atgaatattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagttt--- 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| | |||||||       
T  9373115 atgaatattaaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcagaaaacatcattagtcatcaataagtttgtg 9373016  T
Q  107 cctcctctgctgccacattacactcatcaattaaattattaaaattggttctgc 160  Q
    | | ||||||||||||||||| ||||||| || ||||||||  |||||| ||||    
T  9373015 catactctgctgccacattaccctcatcatttcaattattattattggtgctgc 9372962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 423 - 603
Target Start/End: Original strand, 9298467 - 9298644
Alignment:
Q  423 tttgtttaccaacactcagaggacatgtcagttaactatacacctcaaatacatcacattaccattatgtactgtataataatgcacaatgtatggctca 522  Q
    ||||| |||||||||| |||||||||| ||||||| |||||||||| | |||||  ||||||||||||| | ||||||||||| |||||||| |||| ||    
T  9298467 tttgtataccaacacttagaggacatgccagttaattatacacctcgagtacatttcattaccattatgaaatgtataataatacacaatgtttggcaca 9298566  T
Q  523 attgggacaagtttaccaaattttaaggaaaactcatttagttaccaccacatgctcatattgattcagagaggttagcta 603  Q
    |    |||||||||||| |||||||||||||| |||| |||   | |||||||||||| ||||||| ||||||||||||||    
T  9298567 aacatgacaagtttaccgaattttaaggaaaattcatgtag---ctaccacatgctcacattgattaagagaggttagcta 9298644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 9302282 - 9302429
Alignment:
Q  14 atattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagttt-cctcct 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  | |||||||||||| |||||||||| ||||||| |   ||||| ||||||    
T  9302282 atattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcct 9302381  T
Q  113 ctgctgccacattacactcatcaattaaattattaaaattggttctgc 160  Q
     |||||||||||||| ||||||  || |||||| ||||||||| ||||    
T  9302382 ttgctgccacattaccctcatcgtttcaattataaaaattggtgctgc 9302429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 9332707 - 9332846
Alignment:
Q  14 atattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaag-tttcctcct 112  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||| | | || || ||||||    
T  9332707 atattaaaatgaatttgagatgcatgatgaatatagctggcatgtcttcctagtgttggcaatcagaaaacctcattagtcatcaattagcttgcctcct 9332806  T
Q  113 ctgctgccacattacactcatcaattaaattattaaaatt 152  Q
     |||||||||||||| ||||||| || |||||| ||||||    
T  9332807 ttgctgccacattaccctcatcatttcaattataaaaatt 9332846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 9372881 - 9372803
Alignment:
Q  242 ataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaaaaatccattcttta 321  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9372881 ataattgatattgttgtctgtgttt-gatcatatatatcccacaagatctggatctcatccttctgaaatccattcttta 9372803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 685 - 885
Target Start/End: Original strand, 9298677 - 9298884
Alignment:
Q  685 tgttaggaagttgatcgcatcattgaagaaggtggatggagaatttggactatcaccattatcgaatgaagattatgaactcactgtttttactagagtg 784  Q
    ||||||||| ||||||| |||||||||||   ||||||||||||||||| |||||||||| | |||||| | | |||||||  ||| ||||| |||||||    
T  9298677 tgttaggaatttgatcgaatcattgaaga---tggatggagaatttggagtatcaccatttttgaatgatggtcatgaactagctgcttttattagagtg 9298773  T
Q  785 cttagggaattcattgttaca----------tttttcatctttc-aatctcttttatcatgcataagaggatacttatcatgtgaagagaacgtgagaat 873  Q
    ||||||||||||||||| |||          |||| ||   ||| ||||||||||||||||| ||||||||||  ||||||||||| ||||| | | |||    
T  9298774 cttagggaattcattgtgacaaacatgtctattttacaaagttccaatctcttttatcatgcgtaagaggata-atatcatgtgaatagaacttcaaaat 9298872  T
Q  874 ttcaatgagttg 885  Q
    ||||||||||||    
T  9298873 ttcaatgagttg 9298884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 598
Target Start/End: Complemental strand, 9355811 - 9355443
Alignment:
Q  242 ataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaaaaatccattcttta---------cctgttctcgc 332  Q
    |||||||| |||||||||  | ||||||||||||    |||||||||||||||||||||||||| |||||||||||||||         || ||||| ||    
T  9355811 ataattgacattgttgtccatattttgatcatat----cccacaagatctggatctcatccttctaaaatccattctttaaaccatttcccagttctagc 9355716  T
Q  333 atctcaac-agggaacatgccaggtaatagatacctctgaaccaaaaacagcacctttttattatattagaaacaaagtgat-aataaggtttt-tgttt 429  Q
      |||||  | | ||||||||| | ||||||||| |||||| ||||||   | ||||||| || |||||||||||||||||| ||| ||||||| |||||    
T  9355715 tcctcaaatatgaaacatgccaagcaatagatacatctgaagcaaaaatgac-ccttttttttttattagaaacaaagtgattaatgaggttttctgttt 9355617  T
Q  430 accaacactcagaggacatgtcagttaactatacacctcaaatacatcacatta----ccattatgtac------tgtataataatgcacaatgtatggc 519  Q
    |  ||||||  ||||||||| ||||    |||||||||||| | ||| ||||||    |||| ||| |       |||||||||||||||||||| ||||    
T  9355616 agtaacacttggaggacatgccagtgt--tatacacctcaactccattacattaatcaccatcatgcatatgacatgtataataatgcacaatgtttggc 9355519  T
Q  520 tcaattgggacaagtttaccaaattttaaggaaaactcatttagttaccaccacatgctcatattgattcagagaggtt 598  Q
     ||| || ||||||||||||||||| ||||||||||||||  ||   |||||||||||||| || |||| ||| |||||    
T  9355518 acaaatgtgacaagtttaccaaattctaaggaaaactcatggag---ccaccacatgctcacatagattaagaaaggtt 9355443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 723 - 884
Target Start/End: Original strand, 9294127 - 9294293
Alignment:
Q  723 gagaatttggactatcaccattatcgaatgaagattatgaactcactgtttttactagagtgcttagggaattcattgtta----catt--tttcatctt 816  Q
    |||||||| || ||| |||||||| || ||||||| |||||||| |||||||| |||| || ||| ||||||||||||| |    |||   | || ||||    
T  9294127 gagaattttgagtattaccattattgattgaagatcatgaactcgctgtttttgctagtgttcttcgggaattcattgtgagcaacatgcatgtcttctt 9294226  T
Q  817 tcaatctcttttatcatgcataagaggatacttatcatgtgaagagaacgtgagaatttcaatgagtt 884  Q
      ||||||||||||||||||||| |||||||  ||||||| |||||||| ||||||||||||||||||    
T  9294227 caaatctcttttatcatgcataacaggataca-atcatgtaaagagaacttgagaatttcaatgagtt 9294293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 9366967 - 9366889
Alignment:
Q  242 ataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaaaaatccattcttta 321  Q
    ||||||||||||| ||||||| ||||| |||| ||||||| |||||||||||||||||||||||  ||||||||||||||    
T  9366967 ataattgatattgctgtctgt-ttttggtcatgtatatccaacaagatctggatctcatccttctgaaatccattcttta 9366889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 9309290 - 9309215
Alignment:
Q  242 ataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaaaaatccattcttta 321  Q
    |||| |||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||  ||||||||||||||    
T  9309290 ataactgatattgttgtctgtcttttgatcatat----ccctcaagatctggatctcatccttctgaaatccattcttta 9309215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 9348330 - 9348255
Alignment:
Q  242 ataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaaaaatccattcttta 321  Q
    |||| ||||||||||||||||||||||||||||||    || ||||||||||||||||||||||  ||||||||||||||    
T  9348330 ataactgatattgttgtctgtcttttgatcatata----cctcaagatctggatctcatccttctgaaatccattcttta 9348255  T

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Target: chr5; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 495 - 559
Target Start/End: Complemental strand, 9308271 - 9308207
Alignment:
Q  495 tgtataataatgcacaatgtatggctcaattgggacaagtttaccaaattttaaggaaaactcat 559  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||    
T  9308271 tgtataataatgcacaatgtttggcacaaatgtgacaagtttaccaaattctaaggaaaactcat 9308207  T

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Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 9367193 - 9367053
Alignment:
Q  14 atattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaag-tttcctcct 112  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||| ||   |||||||||||  |||||||||| ||||||  | | || || ||||||    
T  9367193 atattaaaatgagtttgaggtgcacgatgaatatagctggcatgtcctccgagtgttggcaattagaaaacctcattagtcaccaattagcttgcctcct 9367094  T
Q  113 ctgctgccacattacactcatcaattaaattattaaaattggt 155  Q
     |||||||||| |||| |||||| || ||||| ||||||||||    
T  9367093 ttgctgccaca-tacattcatcatttcaatta-taaaattggt 9367053  T

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Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 9348549 - 9348370
Alignment:
Q  50 ctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagttt-cctcctctgctgccacattacactcatcaattaaattattaa 148  Q
    ||||||||||||| |  ||||||||| | |||||||| | ||||||| | | ||||| ||||||||||||| |||||| |||||| | || |||||| ||    
T  9348549 ctggcatgtcttcctaatgttggcaaacagaaaacctgattagtcatcaattagtttgcctcctctgctgctacattagactcataatttcaattataaa 9348450  T
Q  149 aattgg---ttctgcttgttgcttctccgattacgtgccactcgtgcatacacaaacaactaatccattattttgttcta 225  Q
    ||||||   | ||| |  ||| | ||| |||||| ||||||||||| ||| ||||  || ||||||||||||||||||||    
T  9348449 aattggtgatgctgttaattgatactcagattacatgccactcgtgtatagacaacgaattaatccattattttgttcta 9348370  T

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Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 9305906 - 9305950
Alignment:
Q  14 atattgaaatgagtttgagatgcatgatgaatatagctggcatgt 58  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  9305906 atattgaaatgagtttgaggttcatgatgaatatagctggcatgt 9305950  T

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Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 805
Target Start/End: Complemental strand, 9307789 - 9307670
Alignment:
Q  688 taggaagttgatcgcatcattgaagaaggtggatggagaatttggactatcaccattatcgaatgaagattatg--aactcactgtttttactagagtgc 785  Q
    ||||||||||||| |||||||||| ||| |||||| |||||||  |  ||| ||||||| ||||||||||||||  |||||| |  ||| | ||||||||    
T  9307789 taggaagttgatcacatcattgaaaaagatggatgtagaatttacaacatccccattatggaatgaagattatgataactcaataatttgattagagtgc 9307690  T
Q  786 ttagggaattcattgttaca 805  Q
    |||||| | ||||| |||||    
T  9307689 ttagggcagtcattcttaca 9307670  T

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Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 9352431 - 9352475
Alignment:
Q  14 atattgaaatgagtttgagatgcatgatgaatatagctggcatgt 58  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  9352431 atattgaaatgagtttgaggttcatgatgaatatagctggcatgt 9352475  T

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Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 541
Target Start/End: Complemental strand, 9366766 - 9366651
Alignment:
Q  425 tgtttaccaacactcagaggacatgtcagttaactatacacctcaaatacatcacattaccattatgtactgtataataatgcacaatgtatggctcaat 524  Q
    ||||||||||||||| ||||||||| ||  | | |||||||||||||| |||  |||||||||||||   |||||||||||||| ||||| ||||  ||     
T  9366766 tgtttaccaacactcggaggacatggcaagtca-tatacacctcaaatccatttcattaccattatggcatgtataataatgcataatgtttggcataaa 9366668  T
Q  525 tgggacaagtttaccaa 541  Q
     | ||||||||||||||    
T  9366667 cgtgacaagtttaccaa 9366651  T

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Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 733
Target Start/End: Complemental strand, 9347623 - 9347578
Alignment:
Q  688 taggaagttgatcgcatcattgaagaaggtggatggagaatttgga 733  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||    
T  9347623 taggaggttgatcacatcattgaagaagatggatggagaatttgga 9347578  T

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Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 633 - 665
Target Start/End: Complemental strand, 9372622 - 9372590
Alignment:
Q  633 aatgaagcatgaattgctttctattatatatag 665  Q
    |||||||||||||||||||||||||||||||||    
T  9372622 aatgaagcatgaattgctttctattatatatag 9372590  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 688 - 730
Target Start/End: Complemental strand, 9355051 - 9355009
Alignment:
Q  688 taggaagttgatcgcatcattgaagaaggtggatggagaattt 730  Q
    ||||||||||||| ||||||||||| || ||||||||||||||    
T  9355051 taggaagttgatcacatcattgaaggagatggatggagaattt 9355009  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 9309182 - 9309090
Alignment:
Q  343 ggaacatgccaggtaatagatacctctgaaccaaaaacagcacctttttattatattagaaacaaagtg-ataataaggtttt-tgtttaccaaca 436  Q
    ||||||||||||  |||||||||| ||||| ||||||   || |||||| ||||||||||||| ||||| ||||| ||||||| |||||| |||||    
T  9309182 ggaacatgccagacaatagataccactgaatcaaaaa---caactttttgttatattagaaaccaagtgaataatgaggttttctgtttagcaaca 9309090  T

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