View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725-Insertion-5 (Length: 856)
Name: NF5725-Insertion-5
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 721; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 8 - 856
Target Start/End: Original strand, 44565706 - 44566534
Alignment:
| Q |
8 |
cttggttatactggtcttatgtctctgttagtaaggtatggttttggggannnnnnnnnnncctggctttttagttgcctttaacgcaggcttcattgtt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44565706 |
cttggttatactggtcttatgtctctgttagtaaggtatggttttggggatttttttttt-cctggctttttagttgcctttaacgcaggcttcattgtt |
44565804 |
T |
|
| Q |
108 |
taatcaaaaacatttattcctgtggattgaggcaatacataatgtaggtaactgctaatggttgaaaaattcaagtagaatcatagcagattatgctgaa |
207 |
Q |
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| T |
44565805 |
tcatcaaaaacatttattcctgtggattgaggcaatacataatgtaggtaactgctaatggttgaaaaattcaagtagaatcatagcagataatgctgaa |
44565904 |
T |
|
| Q |
208 |
aagaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcattgtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44565905 |
aagaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcattgtg |
44566004 |
T |
|
| Q |
308 |
acacgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttga |
407 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44566005 |
atatgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtttga |
44566104 |
T |
|
| Q |
408 |
catctcaattttcaggtttatcaatcctgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacg |
507 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44566105 |
catctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggac-------------------ttttcctctagttggcacg |
44566185 |
T |
|
| Q |
508 |
tgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgtt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566186 |
tgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgtt |
44566285 |
T |
|
| Q |
608 |
gcagtgtgctgatatattttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtct |
707 |
Q |
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| T |
44566286 |
gcagtgtgctgatatattttattatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtct |
44566385 |
T |
|
| Q |
708 |
aatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaa |
807 |
Q |
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| T |
44566386 |
aatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaa |
44566485 |
T |
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| Q |
808 |
tttacaggtgcctttgggtttggcagtcacatggacatttgcttttttg |
856 |
Q |
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| T |
44566486 |
tttacaggtgcctttgggtttggcagtcacatggacatttgcttttttg |
44566534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 358 - 852
Target Start/End: Complemental strand, 36033142 - 36032652
Alignment:
| Q |
358 |
tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcctgtggttgtatcctcaaccattg |
457 |
Q |
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||||||| ||||||||||| | | || || ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36033142 |
tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg |
36033043 |
T |
|
| Q |
458 |
ctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtct |
557 |
Q |
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| T |
36033042 |
ctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattagtggttattgttttttccct |
36032943 |
T |
|
| Q |
558 |
tgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattgcttttggcagtatcttcgt |
657 |
Q |
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|||||| |||||||||| ||| ||||||||||||||||| ||| | | | ||||| | | ||| | ||||||||| ||||||||||||| |
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| T |
36032942 |
tgtaag-----tgaattcagactcccactttgtctatggtattgatcatcac---gcgctgacttcatccattttttattgctttctgcagtatcttcgt |
36032851 |
T |
|
| Q |
658 |
aagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttc |
757 |
Q |
| |
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|||||||||||| ||||||| | |||||||| ||||||||||||||| ||||||| | ||| |||| ||||| |||| || || ||||||||||||| |
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| T |
36032850 |
aagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgccataatatccttccgagttactctatagcagtgaaaataaatttc |
36032751 |
T |
|
| Q |
758 |
tgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttacctaatttacaggtgcctttgggtttggcagtcacatggacatttgcttt |
852 |
Q |
| |
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|| |||||| ||||||||| ||||||||||| | |||||| |||||||||||| ||||| ||||||||||||||| | |||||| || ||||||| |
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| T |
36032750 |
tgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttcctttgggtttggcaattacatgggcagttgcttt |
36032652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 36034980 - 36034849
Alignment:
| Q |
128 |
tgtggattgaggcaatacataatgtaggtaactgctaatggttgaaaaattcaagtagaatcatagcagattatgctgaaaagaagaataatgttagtaa |
227 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||| || ||||||||| |||||| ||||| | |||||||| |
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| T |
36034980 |
tgtggattgaggcaatacataatgtaggtaactcctagtggttgagagattcaagtaaaactatagcagataatgctgggaagaaaacctgcgttagtaa |
36034881 |
T |
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| Q |
228 |
atacaacatggaaaaatagttttacatagtgc |
259 |
Q |
| |
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| T |
36034880 |
aaacaacaggggaaaatagtattgcatagtgc |
36034849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 417 - 566
Target Start/End: Original strand, 20121896 - 20122045
Alignment:
| Q |
417 |
tttcaggtttatcaatcctgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgag |
516 |
Q |
| |
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||||||| | ||||||||||| ||||||||| |||| ||||||||||||||||||||||| | || || || || || |||| || || ||||||||| |
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| T |
20121896 |
tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag |
20121995 |
T |
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| Q |
517 |
atcggtgcagtacagatattagtgtttattgttttttgtcttgtaagttt |
566 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||| | ||||| |||||| |
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| T |
20121996 |
attggtgcagtacagatattagtggttattgttttctctcttggaagttt |
20122045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 646 - 705
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
646 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
705 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||| || || ||||||||| |
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| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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