View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725-Insertion-6 (Length: 796)

Name: NF5725-Insertion-6
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725-Insertion-6
NF5725-Insertion-6
[»] chr4 (5 HSPs)
chr4 (131-767)||(52481474-52482110)
chr4 (8-73)||(52482106-52482171)
chr4 (440-502)||(16407693-16407755)
chr4 (559-641)||(16407800-16407882)
chr4 (12-105)||(16407471-16407564)
[»] chr2 (10 HSPs)
chr2 (403-689)||(40752665-40752942)
chr2 (563-759)||(41471377-41471574)
chr2 (563-759)||(41478265-41478462)
chr2 (407-518)||(41471607-41471718)
chr2 (407-518)||(41478495-41478606)
chr2 (391-520)||(41485701-41485830)
chr2 (12-77)||(41478864-41478929)
chr2 (12-77)||(41471863-41471928)
chr2 (560-687)||(41485543-41485673)
chr2 (12-77)||(40753119-40753184)


Alignment Details
Target: chr4 (Bit Score: 601; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 131 - 767
Target Start/End: Complemental strand, 52482110 - 52481474
Alignment:
Q  131 taattactaagaaatgatgcatcatagttttaggggggaaatatatccaaaacagtgcttatttatacgacaagttgaactgaagtcactgtcacatgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52482110 taattactaagaaatgatgcatcatagttttaggggggaaatatatccaaaacagtgcttatttatacaacaagttgaactgaagtcactgtcacatgtg 52482011  T
Q  231 ccagtagtaaaatcaacctctaaaatagcgactatacttacaaaatgtattattatggacgatggtactgttgaaatttaataagaaccaaacttaaaat 330  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  52482010 ccagtagtaaaatcaacctctaaaatagagactatacttacaaaatgtattattatggacgacggtactgttgaaatttaataagaaccaaacttaagat 52481911  T
Q  331 ctcgtgattttgtagcaaattaaaacacatttaactcaagatattaacttgaacttaactaacataattttggaagtcattgtaccttggatttcccttc 430  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481910 ctcgtgattttgtagcgaattaaaacatatttaactcaagatattaactttaacttaactaacataattttggaagtcattgtaccttggatttcccttc 52481811  T
Q  431 tttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactcgactgctttcaattgcacttcctcagaa 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481810 tttatcaactacaattttgaagggatgccaacttggatctttaagacattcatcccactttgagcaccactcgactgctttcaattgcacttcctcagaa 52481711  T
Q  531 actttattcctagcttttttcctaggccttgctttcccattcacctcatcagaaaacttccgcttagctgcttccaaaaatggctcagtatcaaggttac 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52481710 actttattcctagcttttttcctaggccttgctttcccattcacctcatcagaaaacttcctcttagctgcttccaaaaatggctcagtatcaaggttac 52481611  T
Q  631 ccatccttttcacagaaattatggttcgaggtttctttgggcagccaatccactgtgaataaagaatgcagattgcttgaagaaaacaaacaatgaaatc 730  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481610 ccatccttttcacagaaattatggttcgaggtttctttgggcagccaatccactgtgaataaagaatgcagattgcttgaagaaaacaaacaatgaaatc 52481511  T
Q  731 atgggagcaaaagcaacagcaacacactatcctgttt 767  Q
    |||||||||||||||||||||||||||||||||||||    
T  52481510 atgggagcaaaagcaacagcaacacactatcctgttt 52481474  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 52482171 - 52482106
Alignment:
Q  8 atattaacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataatt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52482171 atattaacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataatt 52482106  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 16407693 - 16407755
Alignment:
Q  440 tacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactc 502  Q
    ||||| |||||| |||||||| ||||||||  |||||||||||||||||||||||||||||||    
T  16407693 tacaaatttgaacggatgccagcttggatcgctaagatattcatcccactttgagcaccactc 16407755  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 641
Target Start/End: Original strand, 16407800 - 16407882
Alignment:
Q  559 ttgctttcccattcacctcatcagaaaacttccgcttagctgcttccaaaaatggctcagtatcaaggttacccatccttttc 641  Q
    |||| ||| ||||||| ||||| || ||||| | |||||||||||||  |||||||| | ||||||| ||||||||| |||||    
T  16407800 ttgccttctcattcacttcatccgagaactttctcttagctgcttcctcaaatggcttaatatcaagtttacccatcattttc 16407882  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 16407471 - 16407564
Alignment:
Q  12 taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataattgctacagatgtcaaattttctgtatatagatg 105  Q
    |||||||||||||||||| || || || ||| | || | |||||| |||||| ||||||||||| |  |||| ||| |||||||||||| ||||    
T  16407471 taacatatattagatcatcgtccacgcagtttacataagggaaaggaacatgacaaataattgccaacgatggcaatttttctgtatattgatg 16407564  T

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Target: chr2 (Bit Score: 77; Significance: 3e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 403 - 689
Target Start/End: Complemental strand, 40752942 - 40752665
Alignment:
Q  403 gaagtcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactc 502  Q
    ||||||||||||||||||| ||||||||||||||   ||||| |||||| |||||||| ||||||||||||| | | |||||||||||||||||||||||    
T  40752942 gaagtcattgtaccttggagttcccttctttatcggttacaactttgaacggatgccagcttggatctttaacacagtcatcccactttgagcaccactc 40752843  T
Q  503 gactgctttcaattgcacttcctcagaaactttattcctagcttttttcctaggccttgctttcccattcacctcatcagaaaacttccgcttagctgct 602  Q
    || |||||||| || | || |||| |||| |||  || |||         |||    ||||||| ||||||  ||||||||||  || | ||||||||||    
T  40752842 gattgctttcattttccctgcctctgaaagttttctcttag---------tag---ctgctttctcattcatttcatcagaaatttttctcttagctgct 40752755  T
Q  603 tccaaaaatggctcagtatcaaggttacccatccttttcacagaaattatggttcga--ggt-ttctttgggcagccaatccactgtgaa 689  Q
    |||| |||||||| | ||||||  | |||||||||||||||||||||||||  | ||  ||| |||||||||||||||||||||||||||    
T  40752754 tccagaaatggcttaatatcaacttcacccatccttttcacagaaattatgacttgagcggtgttctttgggcagccaatccactgtgaa 40752665  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 563 - 759
Target Start/End: Complemental strand, 41471574 - 41471377
Alignment:
Q  563 tttcccattcacctcatcagaaaacttccgcttagctgcttccaaaaatggctcagtatcaaggttacccatccttttcacagaaattatggttcgagg- 661  Q
    |||| ||||||| |||||||||||||| | ||||||||||||||||||||||| | | ||||| |  ||||||||||||||||||||||||| ||||||     
T  41471574 tttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggcttaatctcaagttctcccatccttttcacagaaattatggctcgagga 41471475  T
Q  662 --tttctttgggcagccaatccactgtgaataaagaatgcagattgcttgaagaaaacaaacaatgaaatcatgggagcaaaagcaacagcaacacacta 759  Q
       ||||||||||| ||||||||||| ||| || |||   | ||| || ||| ||| ||||||||||||||||||   | ||||||||||||||| ||||    
T  41471474 gccttctttgggcatccaatccactgcgaacaaggaaaaga-attactggaacaaaccaaacaatgaaatcatggccac-aaagcaacagcaacaaacta 41471377  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 563 - 759
Target Start/End: Complemental strand, 41478462 - 41478265
Alignment:
Q  563 tttcccattcacctcatcagaaaacttccgcttagctgcttccaaaaatggctcagtatcaaggttacccatccttttcacagaaattatggttcgagg- 661  Q
    |||| ||||||| |||||||||||||| | ||||||||||||||||||||||| | | ||||| |  ||||||||||||||||||||||||| ||||||     
T  41478462 tttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggcttaatctcaagttctcccatccttttcacagaaattatggctcgagga 41478363  T
Q  662 --tttctttgggcagccaatccactgtgaataaagaatgcagattgcttgaagaaaacaaacaatgaaatcatgggagcaaaagcaacagcaacacacta 759  Q
       ||||||||||| ||||||||||| ||| || |||   | ||| || ||| ||| ||||||||||||||||||   | ||||||||||||||| ||||    
T  41478362 gccttctttgggcatccaatccactgcgaacaaggaaaaga-attactggaacaaaccaaacaatgaaatcatggccac-aaagcaacagcaacaaacta 41478265  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 407 - 518
Target Start/End: Complemental strand, 41471718 - 41471607
Alignment:
Q  407 tcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactcgact 506  Q
    ||||||||||||||||||||| |||||||||   |||| |||||| |||||||| || |||||||||||| | ||||||||| | ||||||||||||| |    
T  41471718 tcattgtaccttggatttcccgtctttatcagtcacaactttgaacggatgccagctgggatctttaagacagtcatcccacgtagagcaccactcgatt 41471619  T
Q  507 gctttcaattgc 518  Q
    ||||||||||||    
T  41471618 gctttcaattgc 41471607  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 407 - 518
Target Start/End: Complemental strand, 41478606 - 41478495
Alignment:
Q  407 tcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactcgact 506  Q
    ||||||||||||||||||||| |||||||||   |||| |||||| |||||||| || |||||||||||| | ||||||||| | ||||||||||||| |    
T  41478606 tcattgtaccttggatttcccgtctttatcagtcacaactttgaacggatgccagctgggatctttaagacagtcatcccacgtagagcaccactcgatt 41478507  T
Q  507 gctttcaattgc 518  Q
    ||||||||||||    
T  41478506 gctttcaattgc 41478495  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 391 - 520
Target Start/End: Complemental strand, 41485830 - 41485701
Alignment:
Q  391 aacataattttggaagtcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactt 490  Q
    ||||||||||  |||||| |||||||||||| ||||||||| | |||  ||||| |||||| |||||||| || ||||| |||| | | |||||||||||    
T  41485830 aacataatttgtgaagtcgttgtaccttggagttcccttctctgtcagttacaactttgaacggatgccagctaggatccttaacacagtcatcccactt 41485731  T
Q  491 tgagcaccactcgactgctttcaattgcac 520  Q
    |||||||||||||| |||||||| ||||||    
T  41485730 tgagcaccactcgattgctttcatttgcac 41485701  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 41478929 - 41478864
Alignment:
Q  12 taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataattgcta 77  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |||||    
T  41478929 taacatatattagatcatggtccatgcagttcatatcagggaaacaaacatgccaaataagtgcta 41478864  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 41471928 - 41471863
Alignment:
Q  12 taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataattgcta 77  Q
    ||||||||||||||||||||  ||||| |||||||||| ||||| ||||||||||||||| |||||    
T  41471928 taacatatattagatcatggcccatgcagttcatatcagggaaacaaacatgccaaataagtgcta 41471863  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 560 - 687
Target Start/End: Complemental strand, 41485673 - 41485543
Alignment:
Q  560 tgctttcccattcacctcatcagaaaacttccgcttagctgcttccaaaaatggctcagtatcaaggttacccatccttttcacagaaattatggttcga 659  Q
    ||||||| ||||||  ||||||||||  || | |||||||||||||  |||||||| | ||||||| |  ||||||||||||||||||||||||  ||||    
T  41485673 tgctttctcattcatttcatcagaaatttttctcttagctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcga 41485574  T
Q  660 g---gtttctttgggcagccaatccactgtg 687  Q
    |      ||||||||||||||||||||||||    
T  41485573 gcactggtctttgggcagccaatccactgtg 41485543  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 40753184 - 40753119
Alignment:
Q  12 taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataattgcta 77  Q
    |||||||||||||||||||||  |||| ||||||| || ||||| ||| ||||||||||| |||||    
T  40753184 taacatatattagatcatggtttatgcagttcatagcagggaaacaaatatgccaaataagtgcta 40753119  T

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