View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725-Insertion-7 (Length: 760)
Name: NF5725-Insertion-7
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725-Insertion-7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 7 - 760
Target Start/End: Original strand, 23186837 - 23187601
Alignment:
| Q |
7 |
atatattgcattctaaaccaaatcaaacaacgaatttttagtccaatgtcataaatttaataataatctacccgcaagaaattacaacacaaatcaaaac |
106 |
Q |
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| T |
23186837 |
atatattgcattctaaaccaaatcaaacaacgcatttttagtccaatgtcataaatttaataataatctacccgcaagaaattacaacacaaatcaaaac |
23186936 |
T |
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| Q |
107 |
ttcacaaaatatgaacaaagaacgataacatagaaattacacacatgcaaataaattgttaagaagttgaacttgcacccaatgtgaagtacataaaata |
206 |
Q |
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| T |
23186937 |
ttcacaaaatatgaacaaagaacgataacatagaaattacacacatgcaaataaattgttaagaagttgaacttgcacccaatctgaagtacatgaaata |
23187036 |
T |
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| Q |
207 |
ttaacaattttttcatacctagtatt--------------cttacttgtaattctcagctactacaagatcactacttgtttgtcccaacaaactagtca |
292 |
Q |
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| T |
23187037 |
ttaacaattttttcatccctagtattttgctattagtattcttacttgttattctcagctaccacaagatcactgcttgtttgtcccaacaaactactca |
23187136 |
T |
|
| Q |
293 |
tcgatcgcgctttcaccattccaatcttcatcctcttcttcgcgataatcaacggcttcttctcatctttatcttcaccatcaaactttgttagtttttc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23187137 |
tcgatcgcgctttcaccattccaatcttcatcctcttcttcgcgataatcaacggcttcttctcatctttatcttcaccatcaaactttgttagcttttc |
23187236 |
T |
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| Q |
393 |
aagagatggagattcagtttgagatattggattttcaatagaannnnnnncagccacaatagacctatttcttacacttgtcatgcttctcaatcttcct |
492 |
Q |
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| T |
23187237 |
aagagatggaggttcagtttgagatattggattttcaatagaatttttttcagccacaatagacctatttcttacacttgtcatgcttctcaatcttcct |
23187336 |
T |
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| Q |
493 |
ttccctaaatgatgctcacaaagagaataaccaactagggttggttgacaacatctccatcctcttccattaactcgactgcaccgcgaaccttccataa |
592 |
Q |
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| T |
23187337 |
ttccctaaatgatgctcacaaagagaataaccaactagggtttgttgacaacacctccatcctcttccattaactcgactgcaccgcgaaccttccataa |
23187436 |
T |
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| Q |
593 |
ttgcaccacctcttaccttctttttcatttcaattttgtaaacattatataaggattaatatataaattagagtgcaagaatatatacnnnnnnnnnnnn |
692 |
Q |
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| T |
23187437 |
gtgcaccacctcttaccttcttttttatttcaattttgtaaacattatataaggattaatatataaattagagtgcaagaatatatac---aaaaaaaaa |
23187533 |
T |
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| Q |
693 |
ntgagaatttgagaaaatgaacttctaaccttcttttgttttgtttctctaaccaccactacctcttc |
760 |
Q |
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| T |
23187534 |
atgagaatttgagaaaatgaacttctaaccttcttttgttttgtttctctaaccatcactacctcttc |
23187601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 452 - 590
Target Start/End: Original strand, 37090718 - 37090856
Alignment:
| Q |
452 |
tagacctatttcttacacttgtcatgcttctcaatcttcctttccctaaatgatgctcacaaagagaataaccaactagggttggttgacaacatctcca |
551 |
Q |
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|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||| |
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| T |
37090718 |
tagatctatttctaacacttgtcatacttctcaatcttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctcca |
37090817 |
T |
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| Q |
552 |
tcctcttccattaactcgactgcaccgcgaaccttccat |
590 |
Q |
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| T |
37090818 |
tcctcttccattaacacgactgcaccttgaaccttccat |
37090856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 452 - 590
Target Start/End: Original strand, 37097085 - 37097223
Alignment:
| Q |
452 |
tagacctatttcttacacttgtcatgcttctcaatcttcctttccctaaatgatgctcacaaagagaataaccaactagggttggttgacaacatctcca |
551 |
Q |
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| T |
37097085 |
tagatctatttctaacacttgtcatacttctcaatcttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctcca |
37097184 |
T |
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| Q |
552 |
tcctcttccattaactcgactgcaccgcgaaccttccat |
590 |
Q |
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| T |
37097185 |
tcctcttccattaacacgactgcaccttgaaccttccat |
37097223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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