View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725-Insertion-9 (Length: 713)

Name: NF5725-Insertion-9
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725-Insertion-9
NF5725-Insertion-9
[»] chr7 (9 HSPs)
chr7 (10-713)||(22759109-22759819)
chr7 (140-205)||(39542227-39542292)
chr7 (132-211)||(13960645-13960723)
chr7 (170-208)||(1418527-1418565)
chr7 (132-208)||(3836607-3836683)
chr7 (170-206)||(7513667-7513703)
chr7 (133-180)||(20553174-20553221)
chr7 (170-208)||(529470-529508)
chr7 (135-208)||(6977489-6977562)
[»] chr8 (13 HSPs)
chr8 (132-194)||(24326101-24326163)
chr8 (151-208)||(2606138-2606195)
chr8 (132-201)||(30191072-30191141)
chr8 (138-206)||(7008675-7008742)
chr8 (173-208)||(6526176-6526211)
chr8 (132-207)||(11569382-11569457)
chr8 (7-61)||(5226522-5226576)
chr8 (138-208)||(6950398-6950468)
chr8 (175-205)||(43730867-43730897)
chr8 (151-201)||(44236754-44236804)
chr8 (12-65)||(11119091-11119144)
chr8 (147-208)||(14926906-14926967)
chr8 (162-207)||(27465451-27465496)
[»] chr6 (11 HSPs)
chr6 (132-206)||(2455880-2455954)
chr6 (162-208)||(12111067-12111113)
chr6 (119-200)||(32848528-32848610)
chr6 (172-207)||(5977039-5977074)
chr6 (132-203)||(32917267-32917338)
chr6 (138-208)||(8010433-8010503)
chr6 (132-194)||(32976048-32976110)
chr6 (132-205)||(7148736-7148809)
chr6 (131-208)||(20861622-20861699)
chr6 (46-131)||(24838769-24838854)
chr6 (171-208)||(31338086-31338123)
[»] chr2 (10 HSPs)
chr2 (138-208)||(22878174-22878244)
chr2 (11-208)||(28803454-28803652)
chr2 (133-202)||(5759505-5759574)
chr2 (132-200)||(787402-787470)
chr2 (172-208)||(15370247-15370283)
chr2 (14-73)||(13864577-13864636)
chr2 (132-190)||(3067321-3067379)
chr2 (133-211)||(15200254-15200332)
chr2 (132-205)||(9996808-9996881)
chr2 (170-207)||(38767507-38767544)
[»] chr5 (11 HSPs)
chr5 (132-200)||(32172723-32172791)
chr5 (145-204)||(14980592-14980651)
chr5 (15-65)||(35135754-35135804)
chr5 (132-208)||(8651276-8651352)
chr5 (132-211)||(2568728-2568807)
chr5 (10-65)||(6739795-6739850)
chr5 (132-206)||(1464946-1465019)
chr5 (170-208)||(10771812-10771850)
chr5 (170-208)||(14331474-14331512)
chr5 (174-208)||(22209748-22209782)
chr5 (132-205)||(11457168-11457241)
[»] chr4 (7 HSPs)
chr4 (132-207)||(18628478-18628553)
chr4 (132-208)||(7367978-7368054)
chr4 (406-473)||(7075169-7075236)
chr4 (132-206)||(6428088-6428162)
chr4 (132-190)||(18011941-18011999)
chr4 (167-208)||(38478817-38478858)
chr4 (8-65)||(51555959-51556016)
[»] chr3 (10 HSPs)
chr3 (136-207)||(22667477-22667548)
chr3 (136-207)||(22724116-22724187)
chr3 (18-65)||(2128343-2128390)
chr3 (133-211)||(2923549-2923627)
chr3 (144-206)||(45590733-45590795)
chr3 (12-65)||(905062-905115)
chr3 (171-208)||(1288773-1288810)
chr3 (132-201)||(37273204-37273273)
chr3 (11-88)||(41028920-41028997)
chr3 (163-208)||(43079774-43079819)
[»] scaffold0100 (1 HSPs)
scaffold0100 (5-62)||(42535-42592)
[»] chr1 (10 HSPs)
chr1 (132-208)||(4549465-4549541)
chr1 (140-208)||(26679432-26679500)
chr1 (136-199)||(32515374-32515437)
chr1 (132-187)||(43371836-43371891)
chr1 (170-208)||(6292600-6292638)
chr1 (132-194)||(37272532-37272594)
chr1 (11-65)||(52286602-52286656)
chr1 (174-211)||(14385714-14385751)
chr1 (170-207)||(32958745-32958782)
chr1 (4-65)||(44032091-44032152)
[»] scaffold0091 (1 HSPs)
scaffold0091 (7-61)||(5939-5993)
[»] scaffold0590 (1 HSPs)
scaffold0590 (12-65)||(1166-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (12-65)||(2756-2809)


Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 10 - 713
Target Start/End: Original strand, 22759109 - 22759819
Alignment:
Q  10 tttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaaggcgattttctttcaaataagctaatagctgatttcataagctat 109  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  | ||  ||||| ||||||||| |||||||||||||||||||    
T  22759109 tttatcatataagcgtttatgtttaagctatttgtataacaaaagataaaataaaggaaaattgttttcatataagctaaaagctgatttcataagctat 22759208  T
Q  110 ccagaagagattatggaaataaataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatccg 209  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||       
T  22759209 ccaggagagcttatggaaataaataagctgtttccataagctctctcgaactgtctcgctagtgcttatgccagtagataagctcaaataagtcaattaa 22759308  T
Q  210 aaaataaccct--ttctaatacatatggttcatcagattttccggcacaataattggacaagaggatatttcttcacactggttgaattcaaaatggaga 307  Q
    ||||||| |||  |||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22759309 aaaataatcctaattctaatacat--gattcatcagattttctggcacaataattggacaagaggatatttcttcacactggttgaattcaaaatggaga 22759406  T
Q  308 tcactcaaggtattctcacctttgattt-tgcaatagtccactttgtttcga-------gtgatggtaaggtattcgtttattcatccgttcttgtcata 399  Q
    |||||||||||||||||||||||||| | | ||||| ||||||||||||| |       ||||||||||||||||| || ||||||||  |||| |||||    
T  22759407 tcactcaaggtattctcacctttgatatcttcaataatccactttgtttcaactttcaagtgatggtaaggtattcatt-attcatccactcttctcata 22759505  T
Q  400 tattctcaggttcaatgggatgatcctgcatcaagtccaagacctgatagaatttcaccatgggagatagaaccccttatggcttctgttcctacatcta 499  Q
    ||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22759506 tattcacaggttcaatgggatgaccctgcatcgattccaagacctgatagaatttcaccatgggagatagaaccccttatggcttctgttcctacatcta 22759605  T
Q  500 ttcaacctgctgttgcaaaatataaaaggcctcggctacctagtgaagttccagattttggtaaggatgcgcaatattttatatcctataatcgttttca 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22759606 ttcaacctgctgttgcaaaatataaaaggcctcggctacctagtgaagttccagattttggtaaggatgcgcaatattttatatcctataatcgttttca 22759705  T
Q  600 tttcaaatgctcttccgaaatttcacactttgtagtcgtcaaatccatgaagctgacctcccttagtagggttagcttagtgggctaagacttggtggtt 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22759706 tttcaaatgctcttccgaaatttcacactttgtagtcgtcaaatcaatgaagctgacctcccttagtagggttagctcagtgggctaagacttggtggtt 22759805  T
Q  700 gttttgctgacgtt 713  Q
    ||||||||||||||    
T  22759806 gttttgctgacgtt 22759819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 39542292 - 39542227
Alignment:
Q  140 tttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaa 205  Q
    |||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||| ||||||||||    
T  39542292 tttccataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataagtcaa 39542227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 13960723 - 13960645
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatccgaa 211  Q
    ||||||||||| ||||||||||| | ||  ||||||| |||||||||| || | ||||||||| ||||||||||||||||    
T  13960723 ataagctgttttcataagctctctcaaatagtctcgcaagtgcttatg-caatggataagctcaaataagtcaatccgaa 13960645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 1418527 - 1418565
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  1418527 agtgcttatgccagtagataagctcaaataagtcaatcc 1418565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 3836683 - 3836607
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||| ||| |||||| |||||| ||| || || | |||||||| |||||||||||||||| |||||| ||||||    
T  3836683 ataagctattttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatcc 3836607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 7513667 - 7513703
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaat 206  Q
    ||||||||||||||||||||||||| |||||||||||    
T  7513667 agtgcttatgccagtagataagctcaaataagtcaat 7513703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 20553174 - 20553221
Alignment:
Q  133 taagctgtttccataagctctcccgaactgtctcgctagtgcttatgc 180  Q
    ||||||||||||||||||||||| |||| ||||| | |||||||||||    
T  20553174 taagctgtttccataagctctcctgaacagtctcacaagtgcttatgc 20553221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 529470 - 529508
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  529470 agtgtttatgccagtagataagctcaaataagtcaatcc 529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 6977489 - 6977562
Alignment:
Q  135 agctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||||||||||||| | | |||  |||| | | ||||||||||| ||||||| ||| |||||||||||||    
T  6977489 agctgtttccataagctcactcaaacaatctcacaaatgcttatgccaatagataaactctaataagtcaatcc 6977562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 24326101 - 24326163
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctc 194  Q
    |||| |||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||||    
T  24326101 ataaactgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctc 24326163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 2606138 - 2606195
Alignment:
Q  151 tctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||| ||| || || |||||| ||||| ||||||||||||||||||||||||||||    
T  2606138 tctcccaaacagtttcactagtgattatgtcagtagataagctcgaataagtcaatcc 2606195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 30191141 - 30191072
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataag 201  Q
    ||||| ||||||||||||||||||| ||| ||||  | ||||||||||||| ||||||| ||| ||||||    
T  30191141 ataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 7008675 - 7008742
Alignment:
Q  138 tgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaat 206  Q
    |||||| |||||||||| | ||| ||||| | ||||||||||||||||||||| ||| |||||||||||    
T  7008675 tgtttctataagctctctctaac-gtctcacaagtgcttatgccagtagataaactcaaataagtcaat 7008742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 6526211 - 6526176
Alignment:
Q  173 gcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||||||||| ||||||||||||||||||    
T  6526211 gcttatgccagtagataggctcgaataagtcaatcc 6526176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 11569457 - 11569382
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatc 207  Q
    |||||||||||||||||||||||   ||| ||||| | |||| ||||||||| ||||||||||  ||||| |||||    
T  11569457 ataagctgtttccataagctctcttaaacagtctcacaagtggttatgccagcagataagctctgataagccaatc 11569382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 5226522 - 5226576
Alignment:
Q  7 acatttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaat 61  Q
    |||||||||||||||| |||||||| |||  |||||  |||||||||||||||||    
T  5226522 acatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5226576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 6950398 - 6950468
Alignment:
Q  138 tgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||| ||||||||||||| |||  |||| | | || |||||||||||||||| ||| |||||||||||||    
T  6950398 tgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaataagtcaatcc 6950468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 43730867 - 43730897
Alignment:
Q  175 ttatgccagtagataagctcgaataagtcaa 205  Q
    |||||||||||||||||||||||||||||||    
T  43730867 ttatgccagtagataagctcgaataagtcaa 43730897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 44236804 - 44236754
Alignment:
Q  151 tctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataag 201  Q
    |||||||||| ||||| | ||||||||||||||||||||| ||| ||||||    
T  44236804 tctcccgaacagtctcacaagtgcttatgccagtagataaactcaaataag 44236754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 11119144 - 11119091
Alignment:
Q  12 tatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    |||||||||| || |||||| || || |||| ||||||||||||||||||||||    
T  11119144 tatcatataatcgcttatgtatacgatatttctataacaaaagataaaataaag 11119091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 14926967 - 14926906
Alignment:
Q  147 aagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||| | ||| ||||| | |||||||||||||||| ||||| || |||||||||||||    
T  14926967 aagctctctcaaacagtctcacaagtgcttatgccagtaaataagttcaaataagtcaatcc 14926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 27465451 - 27465496
Alignment:
Q  162 gtctcgctagtgcttatgccagtagataagctcgaataagtcaatc 207  Q
    ||||||| ||||||||||||| |||||||| || ||||||||||||    
T  27465451 gtctcgcaagtgcttatgccaatagataagttcaaataagtcaatc 27465496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 2455880 - 2455954
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaat 206  Q
    ||||| |||||||||||||||| |  |||  |||||| |||||||||||| |||||||||||| |||||||||||    
T  2455880 ataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaataagtcaat 2455954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 12111067 - 12111113
Alignment:
Q  162 gtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  12111067 gtctcgcaagtgcttatgctagtagataagctcaaataagtcaatcc 12111113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 32848610 - 32848528
Alignment:
Q  119 attatggaaataa-ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataa 200  Q
    ||||||||||||  ||||||| ||||||||||||||||| ||| | ||| | | |||||||| |||||||||||||| |||||    
T  32848610 attatggaaatatcataagctatttccataagctctccccaacggactcacaaatgcttatgtcagtagataagctcaaataa 32848528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 5977039 - 5977074
Alignment:
Q  172 tgcttatgccagtagataagctcgaataagtcaatc 207  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5977039 tgcttatgctagtagataagctcgaataagtcaatc 5977074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 32917267 - 32917338
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtc 203  Q
    ||||| ||||||||||||||||||| ||| ||||| | |||| |||| | ||||| ||||||| ||||||||    
T  32917267 ataagttgtttccataagctctcccaaacagtctcacaagtgtttattctagtaggtaagctctaataagtc 32917338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 8010433 - 8010503
Alignment:
Q  138 tgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||| ||||||||||| | |||||||| | | || |||||||| |||||||||||  ||||||||||||    
T  8010433 tgtttctataagctctcctggactgtctcacaaatgtttatgccaatagataagctcacataagtcaatcc 8010503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 32976048 - 32976110
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctc 194  Q
    |||||||||||| ||||||||| || ||| ||||| | ||| |||||||||||| ||||||||    
T  32976048 ataagctgtttctataagctcttccaaacagtctcacaagtacttatgccagtaaataagctc 32976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 7148736 - 7148809
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaa 205  Q
    ||||| ||||||| |||||||| | ||||  |||| | ||||||||||| | ||||||||||| ||||||||||    
T  7148736 ataagttgtttccgtaagctctgctgaacactctcacaagtgcttatgcgactagataagctcaaataagtcaa 7148809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 20861699 - 20861622
Alignment:
Q  131 aataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||| ||||| ||||||||||||| ||  |||||||   | ||||||||||||| ||||||| |||||| ||||||    
T  20861699 aataagatgttttcataagctctcccaaaaagtctcgcatatacttatgccagtaggtaagctcaaataagacaatcc 20861622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 24838854 - 24838769
Alignment:
Q  46 taacaaaagataaaataaaggcgattttctttcaaataagctaatagctgatttcataagctatccagaagagattatggaaataa 131  Q
    ||||||||||||||| |||| | | ||  ||||| ||||||||  ||||||||||||||||||||  | |||| |||| |||||||    
T  24838854 taacaaaagataaaacaaagactaattattttcatataagctataagctgatttcataagctatcatggagagcttatagaaataa 24838769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 31338086 - 31338123
Alignment:
Q  171 gtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  31338086 gtgcttatgctagtagataagctcaaataagtcaatcc 31338123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 22878174 - 22878244
Alignment:
Q  138 tgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||||||| |||||| ||| ||||| | |||||||||| |||| ||||||||| |||||||||||||    
T  22878174 tgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatcc 22878244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 28803652 - 28803454
Alignment:
Q  11 ttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaaggcgattttctttcaaataagctaatagctgatttcataagctatc 110  Q
    |||||||||||| | |||| | ||||  ||||  ||||||||||||||||||||| | |  |  ||||| ||||||||  || || |||| ||| |||||    
T  28803652 ttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaactatc 28803553  T
Q  111 cagaagagattatggaaataa-ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    | | |||| ||||||| ||   ||||| |||||||||| | |||| | ||| ||||| |  ||||||||||| |||||||||||| |||||||||||||    
T  28803552 ctggagagcttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtcaatcc 28803454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 5759574 - 5759505
Alignment:
Q  133 taagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagt 202  Q
    |||||||||||||||||||||||| ||| ||||| | ||| ||||| ||| ||||||| ||| |||||||    
T  5759574 taagctgtttccataagctctcccaaacagtctcacaagtacttataccaatagataaactcaaataagt 5759505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 787402 - 787470
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataa 200  Q
    ||||||||||| |||||| |||| | ||| || || | |||||||||||||||||||| ||||||||||    
T  787402 ataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataa 787470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 15370283 - 15370247
Alignment:
Q  172 tgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15370283 tgcttatgccagtagataagctcaaataagtcaatcc 15370247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 13864577 - 13864636
Alignment:
Q  14 tcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaaggcgatttt 73  Q
    ||||||||| |||||||| ||||  |||| ||||||||||| |||||||||| |||||||    
T  13864577 tcatataagtgtttatgtataagctatttctataacaaaaggtaaaataaagtcgatttt 13864636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 3067379 - 3067321
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataa 190  Q
    ||||||||||| ||||||||||||||||| |||||   |||||||||| |||| |||||    
T  3067379 ataagctgttttcataagctctcccgaacggtctcagaagtgcttatgtcagttgataa 3067321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 15200332 - 15200254
Alignment:
Q  133 taagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatccgaa 211  Q
    |||||||||||||  ||||||| | ||| ||||| | ||| |||||||||  |||||||||| ||||| ||||||||||    
T  15200332 taagctgtttccactagctctcacaaacagtctcacaagtacttatgccaacagataagctcaaataaatcaatccgaa 15200254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 9996808 - 9996881
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaa 205  Q
    ||||| |||||| |||||||||||| | | ||||| | ||| ||||||| ||| ||||||||| ||||||||||    
T  9996808 ataagttgtttctataagctctcccaagcagtctcacaagtacttatgctagttgataagctcaaataagtcaa 9996881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 38767544 - 38767507
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaatc 207  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  38767544 agtgcttatgccagtagataagctcgtataagccaatc 38767507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 32172723 - 32172791
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataa 200  Q
    ||||| ||||||||||||||||||| |||| |||| | ||||||||||| |||| |||||||| |||||    
T  32172723 ataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataa 32172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 14980592 - 14980651
Alignment:
Q  145 ataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtca 204  Q
    |||||||||| | ||| |||||  |||||||||||||||||||||||||| |||||||||    
T  14980592 ataagctctctcaaacagtctctatagtgcttatgccagtagataagctcaaataagtca 14980651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 35135804 - 35135754
Alignment:
Q  15 catataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    |||||||| |||||||| ||||| |||| ||||||||||||||||||||||    
T  35135804 catataagtgtttatgtataagatatttctataacaaaagataaaataaag 35135754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 8651352 - 8651276
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||||||||||||||||| |||||   |||| | |||| |||||| || |||||||||| |||||| ||||||    
T  8651352 ataagctgtttccataagctcttccgaatactctcacgagtgtttatgctagaagataagctcaaataaggcaatcc 8651276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 2568728 - 2568807
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatccgaa 211  Q
    ||||||||||| |||||| ||| |  ||| ||||| | ||||||||  ||||||||||||||| |||||| |||||||||    
T  2568728 ataagctgttttcataagttcttctaaacagtctctcaagtgcttacaccagtagataagctcaaataagacaatccgaa 2568807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 6739795 - 6739850
Alignment:
Q  10 tttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    |||||||||||||||||||||| ||||  |||| |||||  |||||||||||||||    
T  6739795 tttatcatataagcgtttatgtataagtcatttctataaataaagataaaataaag 6739850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 1465019 - 1464946
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaat 206  Q
    ||||||||||| |||||| |||||||||| ||||||| ||  ||||||| || || ||||||| |||||||||||    
T  1465019 ataagctgttttcataagttctcccgaacagtctcgc-agaacttatgctagaagctaagctcaaataagtcaat 1464946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 10771850 - 10771812
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  10771850 agtgcttatgccagtagataagctcaaataagccaatcc 10771812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 14331474 - 14331512
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  14331474 agtgcttatgacagtagataagctcaaataagtcaatcc 14331512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 22209782 - 22209748
Alignment:
Q  174 cttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||||||||||||| |||||||||||||    
T  22209782 cttatgccagtagataagctcaaataagtcaatcc 22209748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 11457168 - 11457241
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaa 205  Q
    ||||| |||||||||||||||| |  ||| ||||| | |||| || ||||| ||||||||||| ||||||||||    
T  11457168 ataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataagtcaa 11457241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 18628553 - 18628478
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatc 207  Q
    ||||| ||||| ||||||||||||| ||| ||||| | |||| ||||| |||||||||||||| |||| |||||||    
T  18628553 ataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatc 18628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 7368054 - 7367978
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||| ||| ||||||||| ||| ||||| | || | ||||||| |||||||| ||| |||||||||||||    
T  7368054 ataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatcc 7367978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 7075236 - 7075169
Alignment:
Q  406 caggttcaatgggatgatcctgcatcaagtccaagacctgatagaatttcaccatgggagatagaacc 473  Q
    ||||||||||||||||| ||| || | | | |||||||||| ||  ||||||||||||||||||||||    
T  7075236 caggttcaatgggatgaaccttcagctattacaagacctgacagggtttcaccatgggagatagaacc 7075169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 6428088 - 6428162
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaat 206  Q
    ||||| ||||| ||||| ||||| | ||||||||| | ||||||||| ||| || |||||||| |||||||||||    
T  6428088 ataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtcaat 6428162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 18011941 - 18011999
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataa 190  Q
    ||||||||||| ||||||||||||||||| |||||   |||||||||| |||| |||||    
T  18011941 ataagctgttttcataagctctcccgaacggtctcagaagtgcttatgtcagttgataa 18011999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 38478817 - 38478858
Alignment:
Q  167 gctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||||||||||||||| |||| |||||| ||||||    
T  38478817 gctagtgcttatgccagtagatatgctcaaataagccaatcc 38478858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 51556016 - 51555959
Alignment:
Q  8 catttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    ||||||||||||||| | |||||| ||||  |||  ||||||||||||||||||||||    
T  51556016 catttatcatataagtgcttatgtataagctattattataacaaaagataaaataaag 51555959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 22667477 - 22667548
Alignment:
Q  136 gctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatc 207  Q
    ||||||||||||| ||||| | ||| ||||| | |||||||||| |||||||||||||| |||||| |||||    
T  22667477 gctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatc 22667548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 22724116 - 22724187
Alignment:
Q  136 gctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatc 207  Q
    ||||||||||||| ||||| | ||| ||||| | |||||||||| |||||||||||||| |||||| |||||    
T  22724116 gctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatc 22724187  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 2128390 - 2128343
Alignment:
Q  18 ataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    |||||||||||||| ||||  |||| ||||||||||||||||||||||    
T  2128390 ataagcgtttatgtataagctatttctataacaaaagataaaataaag 2128343  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 2923549 - 2923627
Alignment:
Q  133 taagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatccgaa 211  Q
    |||| |||||| ||||| ||| || ||| ||||  | ||| |||||| || ||||||||||||||||||||||||||||    
T  2923549 taagttgtttctataagttcttccaaacagtctttcaagtacttatgtcaatagataagctcgaataagtcaatccgaa 2923627  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 45590733 - 45590795
Alignment:
Q  144 cataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaat 206  Q
    ||||||||||||| ||| ||||| | ||||||||||| |||||||||| || || ||||||||    
T  45590733 cataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaat 45590795  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 905115 - 905062
Alignment:
Q  12 tatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    ||||||||||||| ||| || ||||  |||| ||||||||||||||||||||||    
T  905115 tatcatataagcgcttaagtataagctatttctataacaaaagataaaataaag 905062  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 1288810 - 1288773
Alignment:
Q  171 gtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  1288810 gtgcttatgccagttgataagctcaaataagtcaatcc 1288773  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 37273204 - 37273273
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataag 201  Q
    ||||| ||||||||||||||||||| ||| ||||| | ||||||||||| | || ||||| || ||||||    
T  37273204 ataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagttcaaataag 37273273  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 41028997 - 41028920
Alignment:
Q  11 ttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaaggcgattttctttcaaataagcta 88  Q
    |||||||||||| | |||||| ||||  |||| |||||||||||| ||||||||| | || |  ||||||||||||||    
T  41028997 ttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagcta 41028920  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 43079774 - 43079819
Alignment:
Q  163 tctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||| ||||||||||||||||||  |||||| ||||||||||||||    
T  43079774 tctcactagtgcttatgccagtatttaagctagaataagtcaatcc 43079819  T

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Target: scaffold0100 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 42535 - 42592
Alignment:
Q  5 acacatttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaata 62  Q
    |||||||||||||||||| | |||||| ||||  |||| |||||||||||||||||||    
T  42535 acacatttatcatataagtgcttatgtataagtcatttctataacaaaagataaaata 42592  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 4549541 - 4549465
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||| |||||| |||||||||||| ||| |||||   | ||||||||||||||||||| ||| |||||| ||||||    
T  4549541 ataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatcc 4549465  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 26679432 - 26679500
Alignment:
Q  140 tttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    ||||||||||||||| | ||||||||  | |||||| ||| |||||||||||||| ||||| |||||||    
T  26679432 tttccataagctctcgcaaactgtcttaccagtgctaatgacagtagataagctcaaataaatcaatcc 26679500  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 32515437 - 32515374
Alignment:
Q  136 gctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctcgaata 199  Q
    ||||||||||||||||||||| ||| ||||| | ||||||||||  ||||||||| ||| ||||    
T  32515437 gctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 43371891 - 43371836
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtaga 187  Q
    ||||||||||| ||||||||||| | ||| ||||| | ||||||||||||||||||    
T  43371891 ataagctgttttcataagctctctcaaacagtctcacaagtgcttatgccagtaga 43371836  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 6292600 - 6292638
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaatcc 208  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  6292600 agtgcttatgtcagtagataagctcaaataagtcaatcc 6292638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 37272594 - 37272532
Alignment:
Q  132 ataagctgtttccataagctctcccgaactgtctcgctagtgcttatgccagtagataagctc 194  Q
    ||||||||| ||||||||||||| | |||  |||| | |||||||| ||||||||||||||||    
T  37272594 ataagctgtctccataagctctctcaaacaatctcacaagtgcttaagccagtagataagctc 37272532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 52286602 - 52286656
Alignment:
Q  11 ttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    |||||||||||||| |||||  ||||| |||| || |||||||||||||||||||    
T  52286602 ttatcatataagcgcttatgaataagatatttctacaacaaaagataaaataaag 52286656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 14385751 - 14385714
Alignment:
Q  174 cttatgccagtagataagctcgaataagtcaatccgaa 211  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  14385751 cttatgccagtagataagctcaaataagccaatccgaa 14385714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 32958745 - 32958782
Alignment:
Q  170 agtgcttatgccagtagataagctcgaataagtcaatc 207  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  32958745 agtgcttatgacagtagataagctcaaataagtcaatc 32958782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 44032152 - 44032091
Alignment:
Q  4 aacacatttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    ||||| ||||||||||||| |||||||| ||||   ||| ||||||||||| ||||||||||    
T  44032152 aacacgtttatcatataagtgtttatgtataagccgtttctataacaaaagctaaaataaag 44032091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 5939 - 5993
Alignment:
Q  7 acatttatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaat 61  Q
    |||||||||||||||| |||||||| |||  |||||  |||||||||||||||||    
T  5939 acatttatcatataagtgtttatgtataaacaatttcaataacaaaagataaaat 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 1219 - 1166
Alignment:
Q  12 tatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    ||||||||||| | |||||| ||||  |||| ||||||||||||||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaag 1166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 2756 - 2809
Alignment:
Q  12 tatcatataagcgtttatgtttaagaaatttgtataacaaaagataaaataaag 65  Q
    ||||||||||| | |||||| ||||  |||| ||||||||||||||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaag 2809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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