View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725_high_12 (Length: 414)
Name: NF5725_high_12
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_high_12 |
 | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 17322775 - 17322402
Alignment:
| Q |
18 |
ataaattagatatacaaaaagatgtttaaattttgatgagaaattacaaattaaaatataaaatttattgaagggttaaagaatgaagaaaatagactcc |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
17322775 |
ataaattagatataccaaaagatgtttaaattttgatgagaaattacaaattaaaatataaaatttactgaagggttaaagaacgaagaaaatagactcc |
17322676 |
T |
|
| Q |
118 |
attccttaccttactactagaacctttgtgttagagtttgcttccattgatgtggatgagagatctacttgcaagacaaattgaaattcaaatcctatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17322675 |
attccttaccttactactagaacctttgtgttagagtttgcttccattgatgtggatgagagatctacttgcaagacaaattgaaattcaaatcctatat |
17322576 |
T |
|
| Q |
218 |
tga-aaaattattgaagtaaaatatataaaatcacccgctttttaataatacatatataaaagatgttaaaaaacaatagttgaagtcaag-tataatgt |
315 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17322575 |
tgaaaaaatcattgaagtcaaatatataaaatcaccacctttttaatagtacatatataaaagatgttaaaaaacaatagttgaagtcaagttataatgt |
17322476 |
T |
|
| Q |
316 |
taaaaattgaaaattgtaaactcaacaaaaatataactacatacaaatgacatatttaaactcatcaccttatc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17322475 |
taaaaattgaaaattgtaaactcaacaaaaatataactacatacaaatgacatatttaaactcatcaccttatc |
17322402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 356
Target Start/End: Complemental strand, 31896541 - 31896333
Alignment:
| Q |
141 |
ctttgtgttagagtttgcttccattgatgtggatgagagatctacttgcaagacaaattgaaattcaaatcctatattgaaaaattattgaagtaaaata |
240 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||||| ||||| ||||| | || ||||||| |||| ||||||| | ||||||| ||| | |
|
|
| T |
31896541 |
ctttgtgttagagtttgattccaatgatgtggatggaagatctagctgcaaaacaaagtaaacttcaaattctatgttgaaaattatttgaagttaaaaa |
31896442 |
T |
|
| Q |
241 |
tataaaatcacccgctttttaataatacatatataaaagatgttaaaaaacaatagttgaagtcaagtataatgttaaaaattgaaaattgtaaactcaa |
340 |
Q |
| |
|
||| | ||||||| | ||||||| ||||||||||||| ||||| || ||| || || ||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
31896441 |
tatgatatcaccccc--tttaatagtacatatataaaatatgtttaacaac----tttaaactcaagtataatgttaaaaa-tgaaaaatttaaactcaa |
31896349 |
T |
|
| Q |
341 |
caaaaatataactaca |
356 |
Q |
| |
|
||| || |||| |||| |
|
|
| T |
31896348 |
caataaaataattaca |
31896333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 291
Target Start/End: Original strand, 17862297 - 17862517
Alignment:
| Q |
74 |
tataaaatttattgaagggttaaagaatgaagaaaatagactccattccttacctt-actactagaacctttgtgttagagtttgcttccattgatgtgg |
172 |
Q |
| |
|
||||| |||||||||||| ||| ||| || ||||| |||||||| ||||||| |||||| ||| |||||||||| | ||| || ||||||||||| |
|
|
| T |
17862297 |
tataagatttattgaaggaaaaaacaatcaaacaaataaactccattatttacctttactacttgaatctttgtgttaaatattggtttcattgatgtgg |
17862396 |
T |
|
| Q |
173 |
atgagagatctacttgcaagacaaattgaaattcaaatcctatattgaaaaattatt-gaagt-aaaatatataaaatcacccgcttt-ttaataataca |
269 |
Q |
| |
|
|||| ||||| ||||||||||| ||| ||||||| ||| ||| ||||||||| ||||| |||| |||||||||||||| |||| ||||| ||| |
|
|
| T |
17862397 |
atgaataatctagctgcaagacaaagggaacttcaaattatatgttg-aaaattattggaagtaaaaaaatataaaatcaccccctttgataatagcaca |
17862495 |
T |
|
| Q |
270 |
tatataaaagatgttaaaaaac |
291 |
Q |
| |
|
||||||||| ||||| |||||| |
|
|
| T |
17862496 |
tatataaaatatgttgaaaaac |
17862517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 291
Target Start/End: Complemental strand, 17941184 - 17940962
Alignment:
| Q |
74 |
tataaaatttattgaagggttaaagaatgaagaaaatagactccattccttacctt-actactagaacctttgtgttagagtttgcttccattgatgtgg |
172 |
Q |
| |
|
||||| ||||||||||||| ||| ||| || ||||| ||| |||| ||||||| |||||| ||| ||||||||| | |||| || |||| |||||| |
|
|
| T |
17941184 |
tataagatttattgaagggaaaaacaatcaaacaaataaacttcattatttacctttactacttgaatctttgtgttgaattttgatttcatttatgtgg |
17941085 |
T |
|
| Q |
173 |
atgagagatctacttgcaagacaaattgaaattcaaatcctatattgaaaaattattg-aagtaaaa---tatataaaatcacccgctttt-taataata |
267 |
Q |
| |
|
||| ||||| ||||||||||| ||| ||||||| ||||||||||| |||||| |||||||| ||||||||||||||| ||| ||||| || |
|
|
| T |
17941084 |
atggataatctagctgcaagacaaagggaacttcaaattatatattgaaaa-ttattggaagtaaaaaaatatataaaatcacccccttcgataatagta |
17940986 |
T |
|
| Q |
268 |
catatataaaagatgttaaaaaac |
291 |
Q |
| |
|
||||||||||| ||||| |||||| |
|
|
| T |
17940985 |
catatataaaatatgttgaaaaac |
17940962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 291
Target Start/End: Original strand, 17562 - 17782
Alignment:
| Q |
74 |
tataaaatttattgaagggttaaagaatgaagaaaatagactccattccttacctt-actactagaacctttgtgttagagtttgcttccattgatgtgg |
172 |
Q |
| |
|
||||| ||||||||||||| ||| ||| || ||||| ||| |||| ||||||| |||||| ||| |||||||||| | ||||||| ||||||||||| |
|
|
| T |
17562 |
tataagatttattgaagggaaaaacaatcaaacaaataaacttcattatttacctttactacttgaatctttgtgttaaattttgctttcattgatgtgg |
17661 |
T |
|
| Q |
173 |
atgagagatctacttgcaagacaaattgaaattcaaatcctatattgaaaaattatt-gaagtaaaata-tataaaatcacccgctt-tttaataataca |
269 |
Q |
| |
|
||| ||||| ||||||||||| ||| ||||||| ||| ||| ||||||||| ||||||||| | ||||||||||||| ||| ||||| |||| |
|
|
| T |
17662 |
atggataatctagctgcaagacaaaaggaacttcaaattatatgttg-aaaattattggaagtaaaaaactataaaatcacccccttcgataatagtaca |
17760 |
T |
|
| Q |
270 |
tatataaaagatgttaaaaaac |
291 |
Q |
| |
|
||||||||| ||||| |||||| |
|
|
| T |
17761 |
tatataaaatatgttgaaaaac |
17782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University