View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_high_15 (Length: 370)
Name: NF5725_high_15
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_high_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 28150433 - 28150809
Alignment:
| Q |
11 |
cacagatttatggggtatat----gccctagtaaaattggataatagcatcatgtaaatatattttattttctcttaaccattgttaaaagcatctaatt |
106 |
Q |
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| T |
28150433 |
cacagatttatggggtatatatatgccctagtaaaattggataataacatcatgtaaatatattttattttctcttaaccattgttaaaagcatctaatt |
28150532 |
T |
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| Q |
107 |
ttagtgtcaaa-------------tacccacctccgtcgagtccatgcaaactagaatggtggagattcttcttgtagattgcataacttgtgcaacctt |
193 |
Q |
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| T |
28150533 |
ttagtgtcaaactatccttacaaatacccacctccgtcgagtctatgcaaactagaatggtggagatgcttcttgtagattgcataacttgtgcaacctt |
28150632 |
T |
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| Q |
194 |
atttatcgatgtttcactcagttaatcggtaaaataacattacgttctaataatgtgtgtaattgtaaatctaactcgatgtctcgcaactagcatctgc |
293 |
Q |
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| T |
28150633 |
ctttatcgatgtttcactcagttaatcggtaaaataacattacgttctgataatgtgtgtaattgtaaatctaactcgatgtcttgcaactagcatctgc |
28150732 |
T |
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| Q |
294 |
aaatatttctattccatgtcttttaaatacaaaatttatctcaagcacatttttatttaactgatcaatttatgagt |
370 |
Q |
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| T |
28150733 |
aaatatttctattccatgtcttttaaatacaaaatttatctctagcacatttttaattaaatgatcaatttatgagt |
28150809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 6422352 - 6422258
Alignment:
| Q |
213 |
agttaatcggtaaaataacattacgttctaataatgtgtgtaattgtaaatctaactcgatgtctcgcaactagcatctgcaaatatttctattc |
307 |
Q |
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| T |
6422352 |
agttaattgataaaatagcattacatcgtgataatatgtgtaattgtaaacctagctctatgtctcacaactagcatatgcaaatgttcctattc |
6422258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 19318713 - 19318757
Alignment:
| Q |
247 |
tgtgtgtaattgtaaatctaactcgatgtctcgcaactagcatct |
291 |
Q |
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| T |
19318713 |
tgtgtgtgattgtaaacctaacttgatgtctcgcaactagcatct |
19318757 |
T |
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