View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725_high_17 (Length: 347)
Name: NF5725_high_17
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_high_17 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23036178 - 23036506
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036178 |
accaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
23036277 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036278 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
23036377 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036378 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctttcattttgaa |
23036477 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23036478 |
aacctctctcacctcagcttgtgctttct |
23036506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23039049 - 23039377
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||| |||||||| | ||||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
23039049 |
accaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatttgga |
23039148 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||| ||||||| |
|
|
| T |
23039149 |
tctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggcagcaaaa |
23039248 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
23039249 |
gaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa |
23039348 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |
|
|
| T |
23039349 |
aacctctctcacctcatcttgcgctttct |
23039377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23145928 - 23146256
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
23145928 |
accaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtttgga |
23146027 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||| | | |||||| ||||||| |||||||||||||||||||| ||||| ||||| ||| ||||| |||| ||||| |
|
|
| T |
23146028 |
tctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctcggtaacaaaa |
23146127 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
|||||| ||||||||||| ||| | |||||||||||| ||| ||||||||||| |||||| ||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
23146128 |
gaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa |
23146227 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
23146228 |
aacctctctcacctcatcttgtgctttct |
23146256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23024280 - 23024608
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||||||| | || |||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
23024280 |
accaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttgga |
23024379 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||| ||||| | || |||| |||||| | |||| ||||| |||| |||| ||||| |||| |||| |
|
|
| T |
23024380 |
tctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaaaa |
23024479 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23024480 |
gtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattgaa |
23024579 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |
|
|
| T |
23024580 |
aatctctcgcacctcagcttgtgctttct |
23024608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23148766 - 23149094
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||| |||| || ||||||||||| |||||||| |||||||||||||||||||| |||| | |
|
|
| T |
23148766 |
accaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtttgaa |
23148865 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| | || ||| ||||||| || ||||||||||||||||| |||| |||||| ||| ||||| |||| ||||| |
|
|
| T |
23148866 |
tctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctcggtaacaaaa |
23148965 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
|||||| |||||||||| ||| | |||||||||||| ||| ||||||||||| |||||| ||||| ||||| || || ||| |||||||||||||||| |
|
|
| T |
23148966 |
gaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttcattttgaa |
23149065 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
23149066 |
aacctctctcacctcatcttgtgctttct |
23149094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23032722 - 23033035
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23032722 |
accaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatc---------------tctctggttcagtccagtagtttgga |
23032806 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||||| ||||| ||||||||||||||||||||| ||||||||||| | || |||||||||||||||| |
|
|
| T |
23032807 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
23032906 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
||||| || |||||| ||||| |||||||||||||||||||||||||||||| |||| | | ||| |||| || || ||| |||||||||||||||| |
|
|
| T |
23032907 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttcatcaacctttcctttcattttgaa |
23033006 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23033007 |
aacctctctcacctcagcttgtgctttct |
23033035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 23140054 - 23140374
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| | | | ||||||||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23140054 |
accaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttgga |
23140153 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
||||| || |||||||| ||||| | |||||| |||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
23140154 |
tctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaaaa |
23140253 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||| ||||||||||||| ||| | |||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
23140254 |
gaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcattttgaa |
23140353 |
T |
|
| Q |
301 |
aacctctctcacctcagcttg |
321 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
23140354 |
aacctctctcacctcatcttg |
23140374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23017070 - 23017398
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||||| || || ||||||||||| ||||||||| || |||| ||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
23017070 |
accaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
23017169 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||| | |||||| |||||| |||||||||||||||| |||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
23017170 |
tctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
23017269 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
||||| || ||| ||||| || |||||||||||||| |||||||||| |||| |||||| || || || || || || |||| |||||||||||| | |
|
|
| T |
23017270 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatttatgcatttttcatcaacccgtcctttcatttttat |
23017369 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
||| || ||||| ||| |||||||||||| |
|
|
| T |
23017370 |
aacatccctcacttcatcttgtgctttct |
23017398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 22946412 - 22946588
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | |||| || || || || ||||| || |||||||| | ||||| |||||||| || |||||| |
|
|
| T |
22946412 |
accaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttgga |
22946511 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttg |
177 |
Q |
| |
|
|| ||| |||||||||||||||| ||| | ||| |||| || || |||||||||||||||| ||| |||||||||| |
|
|
| T |
22946512 |
tcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgcttg |
22946588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22971959 - 22972162
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| | |||| || || || || ||||| || |||||||| | ||||| |||||||| || |||||| |
|
|
| T |
22971959 |
accaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttgga |
22972058 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|| ||| |||||||||||||||| ||| | ||| |||| || || |||||||||||||||| ||| |||| ||||| ||||| | ||||||| |||| |
|
|
| T |
22972059 |
tcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttgtccacacacccttggtactaaaa |
22972158 |
T |
|
| Q |
201 |
gagg |
204 |
Q |
| |
|
|||| |
|
|
| T |
22972159 |
gagg |
22972162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 22831843 - 22832042
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||| ||||||||||| | || || ||||| | | || || |||||||| || ||||||||||| ||||| || ||| | ||||||| |
|
|
| T |
22831843 |
accaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgga |
22831942 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||||||||| | | | || || || |||| |||||| | ||| ||||||||| ||||||||| |||| |||||||| ||||||| |
|
|
| T |
22831943 |
tctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaaaa |
22832042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 22941502 - 22941367
Alignment:
| Q |
65 |
ggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccattta |
164 |
Q |
| |
|
||||||||||||||||| ||| ||| | ||||||||||||| |||| ||||||||||| | | | || || || |||| |||||| | ||| ||||||| |
|
|
| T |
22941502 |
ggataaaatctctctgggtcatcccaatgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccattta |
22941403 |
T |
|
| Q |
165 |
tcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
| |||||||||| |||| |||||||| ||||||| |
|
|
| T |
22941402 |
tttcacatgcttgtccacattctcttggaagcaaaa |
22941367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 22916816 - 22916741
Alignment:
| Q |
48 |
tgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatt |
123 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| ||| ||| | ||||||||||||| |||| ||||||||||| |
|
|
| T |
22916816 |
tgtcgatgaacctttcaggataaaatctttctggatcatcccaattatttggatctcttccaatggcccaagcatt |
22916741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 6746 - 6419
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||| |||||||| |||||||||||||||||| | |||||| |
|
|
| T |
6746 |
accaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttgga |
6647 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||||| ||| ||||||| ||||||||||||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
6646 |
tctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctcttggtagcaaaa |
6547 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | || |||| || || ||| |||| |||| | | || |
|
|
| T |
6546 |
gaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaattttcatcaacctttccattcaatgtaaa |
6447 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttc |
328 |
Q |
| |
|
||| |||| ||||||||||||||||||| |
|
|
| T |
6446 |
aacttctcgcacctcagcttgtgctttc |
6419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 21779821 - 21780149
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
21779821 |
accaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttgga |
21779920 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||| ||||||| || ||||| ||||||||||| ||||||||||| ||| ||||| |||| ||||| |
|
|
| T |
21779921 |
tctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctcggtaacaaaa |
21780020 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
|||||| ||||||||||| ||| | |||||||||||| ||||||||||||||| |||||| ||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
21780021 |
gaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa |
21780120 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
||| |||||||| ||| |||||||||||| |
|
|
| T |
21780121 |
aacttctctcacttcatcttgtgctttct |
21780149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 12609913 - 12610241
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
12609913 |
accaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttgga |
12610012 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||| ||||| | | | ||||| || || || ||||| |||| |||| ||| |||||||||| |||| |||||||| || |||| |
|
|
| T |
12610013 |
tctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaa |
12610112 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagtttgttgatacaattctcttcgacccttcctttcattttgaa |
300 |
Q |
| |
|
|||| |||||| |||||||| | ||| ||||| || ||||| || |||||| |||||| || |||||||| ||||| || |||||||||| ||||| |
|
|
| T |
12610113 |
gaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcatttatacaattttcttcaacatttcctttcatgttgaa |
12610212 |
T |
|
| Q |
301 |
aacctctctcacctcagcttgtgctttct |
329 |
Q |
| |
|
| ||||| |||||| |||||||||||| |
|
|
| T |
12610213 |
tatatctcttacctcatcttgtgctttct |
12610241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 15885954 - 15885697
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||| || |||||| |
|
|
| T |
15885954 |
accaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttgga |
15885855 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||| ||||| | | | ||||| || || | ||||| |||||||||| ||| |||||||||| |||| |||||||| || |||| |
|
|
| T |
15885854 |
tctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaa |
15885755 |
T |
|
| Q |
201 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgag |
258 |
Q |
| |
|
|||| | ||||||||||||||| | ||| ||||| || ||||| ||||||||| |||| |
|
|
| T |
15885754 |
gaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgag |
15885697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 12637009 - 12637146
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||| ||| | ||||||||||| |||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
12637009 |
accaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttgga |
12637108 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttact |
138 |
Q |
| |
|
||||| |||||| ||| ||||||| | | |||||||| |
|
|
| T |
12637109 |
tctctaccaattgtccatgcatttactatcaccttact |
12637146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 62161 - 62283
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||||||||||| || | ||||||||||| |||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
62161 |
accaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttgga |
62260 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatt |
123 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
62261 |
tctcttccgattgcccatgcatt |
62283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5594222 - 5594023
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
100 |
Q |
| |
|
||||||||||||| ||||||||||| | || || ||||| | | || || |||||||| || ||||||||||| ||||| || ||| | ||||||| |
|
|
| T |
5594222 |
accaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgga |
5594123 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||||||||| | | | || || || |||| |||||| | ||| ||||||||| ||||||||| |||| |||||||| ||||||| |
|
|
| T |
5594122 |
tctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaaaa |
5594023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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