View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725_high_22 (Length: 296)

Name: NF5725_high_22
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725_high_22
NF5725_high_22
[»] chr8 (4 HSPs)
chr8 (108-286)||(14958005-14958183)
chr8 (119-180)||(9293232-9293293)
chr8 (108-216)||(15292549-15292656)
chr8 (108-216)||(15472918-15473025)
[»] chr6 (5 HSPs)
chr6 (108-274)||(33908569-33908728)
chr6 (108-295)||(1415491-1415678)
chr6 (108-199)||(12155384-12155473)
chr6 (108-296)||(9627132-9627302)
chr6 (228-292)||(12155952-12156016)
[»] chr5 (3 HSPs)
chr5 (118-296)||(7237068-7237246)
chr5 (109-286)||(41715034-41715209)
chr5 (108-218)||(38755682-38755789)
[»] chr2 (3 HSPs)
chr2 (111-286)||(38288434-38288603)
chr2 (110-296)||(31395150-31395330)
chr2 (126-265)||(13486134-13486272)
[»] chr4 (1 HSPs)
chr4 (108-289)||(865235-865414)
[»] chr1 (5 HSPs)
chr1 (111-173)||(28666876-28666938)
chr1 (121-289)||(6397661-6397826)
chr1 (108-296)||(7440814-7441000)
chr1 (107-143)||(41941221-41941257)
chr1 (252-296)||(42517118-42517162)
[»] chr3 (4 HSPs)
chr3 (108-206)||(8543100-8543200)
chr3 (111-216)||(11630080-11630186)
chr3 (154-293)||(43361591-43361730)
chr3 (120-193)||(8541441-8541515)
[»] scaffold0035 (1 HSPs)
scaffold0035 (113-291)||(24397-24574)
[»] chr7 (2 HSPs)
chr7 (112-148)||(15077104-15077140)
chr7 (258-296)||(43814455-43814493)
[»] scaffold0154 (1 HSPs)
scaffold0154 (238-293)||(19338-19391)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 108 - 286
Target Start/End: Complemental strand, 14958183 - 14958005
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| | ||||||| |||||| |||||| |||||||||| |||||||    
T  14958183 aacaacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaattgtgcctacctct 14958084  T
Q  208 gcaactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatata 286  Q
    || | |||||||  ||||  ||| |||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||    
T  14958083 gcgattatagagcagctatagttatgtttctattactgtgagaagaattagggtttcagtgttacaagcaatatatata 14958005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 9293232 - 9293293
Alignment:
Q  119 gtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaac 180  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||    
T  9293232 gtaacaaaagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgttaac 9293293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 15292549 - 15292656
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    |||||||||  |||| | |||||||||||||||||||||||  || |  ||||||||||||||| || |||||  ||||||||||||||||| || ||||    
T  15292549 aacaacaaccggtaagagaagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctatctct 15292647  T
Q  208 gcaactata 216  Q
     | ||||||    
T  15292648 acgactata 15292656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 15472918 - 15473025
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    |||||||||  |||| | |||||||||||||||||||||||  || |  ||||||||||||||| || |||||  ||||||||||||||||| || ||||    
T  15472918 aacaacaaccggtaagagaagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctatctct 15473016  T
Q  208 gcaactata 216  Q
     | ||||||    
T  15473017 acgactata 15473025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 33908569 - 33908728
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||  ||||||||||||||||| ||||       
T  33908569 aacagcaactagtaacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcctacc--- 33908665  T
Q  208 gcaactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaa 274  Q
        ||||||||  ||||  |||| ||||||||| |||||||| |||||| ||||||||| ||||||    
T  33908666 ----ctatagagctgctatagttccgtttctattactgtgataggaattagggtttcagtgttacaa 33908728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 1415678 - 1415491
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaat-gacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctc 206  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||  |||||| || |||||||| || |||||  |||||| |||||||||  ||||||    
T  1415678 aacaaaaactaataacaaaagattaa-taagagaacgaaagagaaaagacaataaatacacgatacttgttaacgcagttcggccaattgtggctacctc 1415580  T
Q  207 tgcaactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtactacta 295  Q
    | | | |||||||  ||||  ||||||||||||||  |||||||||||||| ||||||| | |||||||   |||||||||||||||||    
T  1415579 tacgattatagagcagctatagttctgtttctattattgtgataagaattagggtttcaatgttacaagttgtatatatagtactacta 1415491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 12155384 - 12155473
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgc 199  Q
    |||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||| |||||| |||||| |||||| | ||||||||    
T  12155384 aacaacaactagtaacaaaaaatta--taagagaacgaaagagaaagacaatgaacacacaatattttttaacacagttcggcaaattgtgc 12155473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 108 - 296
Target Start/End: Original strand, 9627132 - 9627302
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    |||||||||||| |||||||||||||||||||||| |||||||||  |||||||||||| ||||||| |||||  |||||  |||||||||  ||         
T  9627132 aacaacaactagaaacaaaagattaaataagagaatgaaagagaaacacaatgaacacatgatatttgttaacccagttcagccaattgtgtcta----- 9627226  T
Q  208 gcaactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtactactac 296  Q
    ||| |||||           |||||||||||||  ||||||||||||||| ||||||||| |||||||||  |||||||||||||||||    
T  9627227 gcagctata-----------gttctgtttctatcactgtgataagaattagggtttcagtgttacaagca--atatatagtactactac 9627302  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 12155952 - 12156016
Alignment:
Q  228 gttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtacta 292  Q
    |||| ||||||||| ||||||||||||||| | ||||||| |||||| |  ||||||||||||||    
T  12155952 gttccgtttctattactgtgataagaattaggatttcagtgttacaaactgtatatatagtacta 12156016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 118 - 296
Target Start/End: Original strand, 7237068 - 7237246
Alignment:
Q  118 agtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgcaactatag 217  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |  |||||| |||||| ||  |||||||||  ||||||    
T  7237068 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatag 7237167  T
Q  218 agtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtactactac 296  Q
    ||  ||||   |||  ||| |||| ||||||||||||||| |||||| || |||||||   | ||||||||||||||||    
T  7237168 agcagctataattccatttttattactgtgataagaattagggtttcggtgttacaagttgtgtatatagtactactac 7237246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 286
Target Start/End: Complemental strand, 41715209 - 41715034
Alignment:
Q  109 acaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||  || ||||   ||||||  ||||||||| |||||||     
T  41715209 acaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatacgat-cttgttaatgcagttcggacaattgtgcctacctcta 41715111  T
Q  209 caactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatata 286  Q
    | || ||||||   |||  |||| ||||||||| ||||||| |||| || || |||||| ||||||||||||||||||    
T  41715110 cgacgatagagcatctatagttccgtttctattactgtgatgagaa-taggggttcagtgttacaagcaatatatata 41715034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 38755789 - 38755682
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||| |||||| |||| | |||| |  ||||||||| |||||||    
T  38755789 aacaacaactagtaacaaaagattaaataagagaacgaaagagaaag---atgaacacaccatatttgttaatacagtttggtcaattgtgcctacctct 38755693  T
Q  208 gcaactataga 218  Q
    || | ||||||    
T  38755692 gcgattataga 38755682  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 38288434 - 38288603
Alignment:
Q  111 aacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgca 210  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||||| |||||| ||||||| ||||| ||||||| ||||||||  |      |||     
T  38288434 aacaactagtaacaaaagattaaataagagattgaaagagaaagacaattaacacatgatatttgttaacgtagttcggccaattgtaat------tgcg 38288527  T
Q  211 actatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatata 286  Q
    |||||||||    ||  ||| ||||||||||||| |||| ||||||| ||||||| | ||| ||||||||||||||    
T  38288528 actatagagcatttatagttatgtttctatttctatgatgagaattagggtttcaatgttataagcaatatatata 38288603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 296
Target Start/End: Original strand, 31395150 - 31395330
Alignment:
Q  110 caacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgc 209  Q
    |||||||||||||||||| || |||||||| ||||||||  || ||||||||||||| ||||||| |||||| || ||| ||||| ||||||| || ||     
T  31395150 caacaactagtaacaaaatat-aaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaacacagctcgtccaatggtgcttatctatg- 31395247  T
Q  210 aactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtactactac 296  Q
      ||||| ||  ||||   ||| |||| |||| ||| |||    |||| ||||||||| ||||||||||||||||||||||||||||    
T  31395248 -gctataaagcagctataattccgtttatattactgcgat---gattagggtttcagtgttacaagcaatatatatagtactactac 31395330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 265
Target Start/End: Original strand, 13486134 - 13486272
Alignment:
Q  126 aagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgcaactatagagtggcta 225  Q
    |||||||||||||||||||||||| ||  |||||||||| || |||||| |||||| ||||| | ||||||| | ||||| ||  ||||||||    |||    
T  13486134 aagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaacacagttcaatcaattgtacctacctatgtgactatagatcaacta 13486232  T
Q  226 cggttctgtttctatttctgtgataagaattaaggtttca 265  Q
      ||||| |||||||| |||||| |||||||| |||||||    
T  13486233 ttgttctatttctattactgtgacaagaattagggtttca 13486272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 865235 - 865414
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    ||||||||  |||||||||| ||||||||||||||||||||  || || |||||| ||||||||||| ||||| | |||||| |||||||| ||| ||||    
T  865235 aacaacaatcagtaacaaaaaattaaataagagaacgaaagtaaaagaaaatgaaaacacgatatttgttaacgtggttcgatcaattgtgtttatctct 865334  T
Q  208 gcaactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagta 289  Q
     | |||||||||| ||||   ||| |||||||||  |||||||  |||||  |||||| | |||| | ||||||||||||||    
T  865335 acgactatagagtagctataattccgtttctattgttgtgata--aattagagtttcaatattacgaacaatatatatagta 865414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 28666938 - 28666876
Alignment:
Q  111 aacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatt 173  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  28666938 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcacgatatt 28666876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 289
Target Start/End: Original strand, 6397661 - 6397826
Alignment:
Q  121 aacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgcaactatagagt 220  Q
    |||| |||||||||||||||||| ||||  ||  |||| ||||| || |||||| |||||  | |||| ||| |||||| ||||||||  |||||||||     
T  6397661 aacataagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaacgcacttcggcca-ttgtgcctacctctgtgactatagagc 6397759  T
Q  221 ggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagta 289  Q
     ||||  ||| |||||||||| |||||||  ||| |||||||||||| |||||||||||||||||||||    
T  6397760 agctatagttttgtttctattactgtgat--gaactaaggtttcagtgttacaagcaatatatatagta 6397826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 296
Target Start/End: Complemental strand, 7441000 - 7440814
Alignment:
Q  108 aacaacaactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctct 207  Q
    ||||||| ||||||||| |||||||||||||||||||||||  ||  |||||  | | ||||||||| |||||  |||||| |||||| |  |||| |||    
T  7441000 aacaacatctagtaacataagattaaataagagaacgaaagtaaaaaacaatatatatacgatatttgttaacgcagttcggccaattatatttacttct 7440901  T
Q  208 gcaactatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtactactac 296  Q
    || ||||||||| || ||  ||| ||||| ||||  ||||||  ||||||  ||||| || |||||| ||||||||||| || ||||||    
T  7440900 gcgactatagagcggttatagttttgtttttattattgtgat--gaattagagtttcggtgttacaaacaatatatataatattactac 7440814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 41941257 - 41941221
Alignment:
Q  107 aaacaacaactagtaacaaaagattaaataagagaac 143  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  41941257 aaacaacgactagtaacagaagattaaataagagaac 41941221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 42517162 - 42517118
Alignment:
Q  252 gaattaaggtttcagttttacaagcaatatatatagtactactac 296  Q
    |||||| |||||| || |||||| |||||||||||||||||||||    
T  42517162 gaattagggtttcggtgttacaaacaatatatatagtactactac 42517118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 8543200 - 8543100
Alignment:
Q  108 aacaacaac-tagtaacaaaagattaaataagagaacgaa-agagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacct 205  Q
    ||||||||| || ||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||| |||||  |||||| |||||||||| |||||    
T  8543200 aacaacaacatattaacaaaagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaacgcagttcggccaattgtgcctacct 8543101  T
Q  206 c 206  Q
    |    
T  8543100 c 8543100  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 11630186 - 11630080
Alignment:
Q  111 aacaactagtaacaaaa-gattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgc 209  Q
    ||||||||||||||||| |||||||||||||||| ||||| || |||||||| || ||||||||| |||||| |||| | |||||||||| ||| ||| |    
T  11630186 aacaactagtaacaaaaagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaacacagtttggccaattgtgcatacatctac 11630087  T
Q  210 aactata 216  Q
     ||||||    
T  11630086 gactata 11630080  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 293
Target Start/End: Complemental strand, 43361730 - 43361591
Alignment:
Q  154 gacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgcaactatagagtggctacggttctgtttctatttctgtgataaga 253  Q
    ||||||||||||| ||||||| ||||| ||||| | |||||  |   |||||||||||||||| ||  | |   |||  |||| ||||  |||||| |||    
T  43361730 gacaatgaacacatgatatttgttaacgtagtttggccaatgatatctacctctgcaactatacagcagttttagtttcgtttgtattaatgtgatgaga 43361631  T
Q  254 attaaggtttcagttttacaagcaatatatatagtactac 293  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  43361630 attaaggtttcagtattacatgcaatatatatagtactac 43361591  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 8541515 - 8541441
Alignment:
Q  120 taacaaaagattaaataagagaacgaa-agagaatgacaatgaacacacgatatttattaacatagttcgaccaa 193  Q
    ||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||| |||||  |||||| ||||    
T  8541515 taacaaaagattaaataagagaacgaagagagaaagacaacgcacacacgatatttgttaacgcagttcggccaa 8541441  T

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Target: scaffold0035 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 291
Target Start/End: Complemental strand, 24574 - 24397
Alignment:
Q  113 caactagtaacaaaagattaaataagagaacgaaagagaatgacaatgaacacacgatatttattaacatagttcgaccaattgtgcttacctctgcaac 212  Q
    ||||| |||||| |||||||||||||||||| ||||  || ||||||||| ||||||| ||  | ||  || |||| |||||| ||| ||||||||| ||    
T  24574 caactggtaacagaagattaaataagagaacaaaagtaaaagacaatgaaaacacgatcttgttaaagtta-ttcggccaattatgcctacctctgcgac 24476  T
Q  213 tatagagtggctacggttctgtttctatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtact 291  Q
    |||||||  |||   |||| ||||||||| | ||||||||| |||  ||||| || ||||||||||||| |||||||||    
T  24475 tatagagcagctgtagttccgtttctattacagtgataagacttagagtttcggtgttacaagcaatatctatagtact 24397  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 15077104 - 15077140
Alignment:
Q  112 acaactagtaacaaaagattaaataagagaacgaaag 148  Q
    |||||||||||||| ||||||||||||||||||||||    
T  15077104 acaactagtaacaacagattaaataagagaacgaaag 15077140  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 43814455 - 43814493
Alignment:
Q  258 aggtttcagttttacaagcaatatatatagtactactac 296  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  43814455 aggtttcagtgttacaagcaatatatatagcactactac 43814493  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 19391 - 19338
Alignment:
Q  238 tatttctgtgataagaattaaggtttcagttttacaagcaatatatatagtactac 293  Q
    ||||||||||||  |||||| ||||||| | |||||| ||||||||||||||||||    
T  19391 tatttctgtgat--gaattagggtttcactgttacaaacaatatatatagtactac 19338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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