View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_high_35 (Length: 244)
Name: NF5725_high_35
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2462054 - 2461829
Alignment:
| Q |
1 |
aacgactatattttgtttgcttcacctgcatataacgcacacacatcaagaaccacttgaaattagtgctgccgattaaaattccggtgaccatatataa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2462054 |
aacgaccatattttgtttgcttcacctgcatataacgcacacacatcaagaaccacttgaaattagtgctgcagattaaaattccggtgaccatatataa |
2461955 |
T |
|
| Q |
101 |
ccaaccacattgctgcaaatgttttatgctctagaaattgcagcactctaactgtatagagtgcaccatctcaatcgttcacggaaactatgtagaacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
2461954 |
ccaaccacattgctgcaaatgttttatgctctagaaattgcagca--ctaactgtacagtgtgcaccatctgaatcgttcacggaaactatgtagaaccg |
2461857 |
T |
|
| Q |
201 |
acacaatgtcagtgtcggacatcaacac |
228 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
2461856 |
acaccatgtcagtgtcggacatcaacac |
2461829 |
T |
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